MELO3C028735 (gene) Melon (DHL92) v4

Overview
NameMELO3C028735
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr01: 15639581 .. 15639836 (-)
RNA-Seq ExpressionMELO3C028735
SyntenyMELO3C028735
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTTTCGCTTGGACAAGGATACTCGTTCAAGTTCAGACCCAACCTCGTGGGGACGACATTGTTTTTCTGTAGCTTCACATGGACTGGACAACACCAAATCTACTGGTTCAATATCTTTGATGACAAAGGGGATGTGGGGAAATGCACTACATGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCAAAAAACCCTGGCAAAGTTATATGCTATAACTACGGAGATAAGGAGCCAAGCATCGT

mRNA sequence

ATGTCCTTTCGCTTGGACAAGGATACTCGTTCAAGTTCAGACCCAACCTCGTGGGGACGACATTGTTTTTCTGTAGCTTCACATGGACTGGACAACACCAAATCTACTGGTTCAATATCTTTGATGACAAAGGGGATGTGGGGAAATGCACTACATGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCAAAAAACCCTGGCAAAGTTATATGCTATAACTACGGAGATAAGGAGCCAAGCATCGT

Coding sequence (CDS)

ATGTCCTTTCGCTTGGACAAGGATACTCGTTCAAGTTCAGACCCAACCTCGTGGGGACGACATTGTTTTTCTGTAGCTTCACATGGACTGGACAACACCAAATCTACTGGTTCAATATCTTTGATGACAAAGGGGATGTGGGGAAATGCACTACATGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCAAAAAACCCTGGCAAAGTTATATGCTATAACTACGGAGATAAGGAGCCAAGCATCG

Protein sequence

MSFRLDKDTRSSSDPTSWGRHCFSVASHGLDNTKSTGSISLMTKGMWGNALHADGSFMNIACACKTQKTLAKLYAITTEIRSQAS
Homology
BLAST of MELO3C028735 vs. NCBI nr
Match: KAE8649706.1 (hypothetical protein Csa_012067 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 4.8e-30
Identity = 71/84 (84.52%), Postives = 74/84 (88.10%), Query Frame = 0

Query: 1  MSFRLDKDTRSSSDPTSWGRHCFSVASHGLDNTKSTGSISLMTKGMWGNALHADGSFMNI 60
          MSF LDK TRSSSDPTSWGR CFS ASHGLDNTKSTGS+S  TKGM GNA HA GSFMNI
Sbjct: 1  MSFHLDKATRSSSDPTSWGRPCFSAASHGLDNTKSTGSMSSTTKGMQGNAPHAHGSFMNI 60

Query: 61 ACACKTQKTLAKLYAITTEIRSQA 85
          ACACKT+KTLAK +AITTEIRSQA
Sbjct: 61 ACACKTRKTLAKKFAITTEIRSQA 84

BLAST of MELO3C028735 vs. NCBI nr
Match: KAE8649710.1 (hypothetical protein Csa_012088, partial [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 2.7e-20
Identity = 55/69 (79.71%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 15  PTSWGRHCFSVASHGLDNTKSTGSISLMTKGMWGNALHADGSFMNIACACKTQKTLAKLY 74
           P   GR CFS ASHGLDNTKSTGS+S  TKGM GNA HA GSFMNIACACKT+KTLAK +
Sbjct: 74  PNLVGRPCFSAASHGLDNTKSTGSMSSTTKGMQGNAPHAHGSFMNIACACKTRKTLAKKF 133

Query: 75  AITTEIRSQ 84
           AITTEIRSQ
Sbjct: 134 AITTEIRSQ 142

BLAST of MELO3C028735 vs. NCBI nr
Match: KAE8649755.1 (hypothetical protein Csa_023757, partial [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 27 SHGLDNTKSTGSISLMTKGMWGNALHADGSFMNIACACKTQKTLAK 73
          SHGLDNTKSTGS+S  TKGM GNA HADGSFMNIACACKT+K   K
Sbjct: 1  SHGLDNTKSTGSMSSTTKGMQGNAPHADGSFMNIACACKTRKNPGK 46

BLAST of MELO3C028735 vs. NCBI nr
Match: KAE8649752.1 (hypothetical protein Csa_023768, partial [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 27 SHGLDNTKSTGSISLMTKGMWGNALHADGSFMNIACACKTQK 69
          SHGLDNTKSTGS+S  TKGM GNA HADGSFMNIACACKT+K
Sbjct: 1  SHGLDNTKSTGSMSSTTKGMQGNAPHADGSFMNIACACKTRK 42

BLAST of MELO3C028735 vs. NCBI nr
Match: KAE8649754.1 (hypothetical protein Csa_023747, partial [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0

Query: 27 SHGLDNTKSTGSISLMTKGMWGNALHADGSFM 59
          SHGLDNTKSTGS+S  TKGM GNA HADGSFM
Sbjct: 1  SHGLDNTKSTGSMSSTTKGMQGNAPHADGSFM 32

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649706.14.8e-3084.52hypothetical protein Csa_012067 [Cucumis sativus][more]
KAE8649710.12.7e-2079.71hypothetical protein Csa_012088, partial [Cucumis sativus][more]
KAE8649755.11.1e-1080.43hypothetical protein Csa_023757, partial [Cucumis sativus][more]
KAE8649752.11.5e-1085.71hypothetical protein Csa_023768, partial [Cucumis sativus][more]
KAE8649754.11.2e-0484.38hypothetical protein Csa_023747, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028735.1MELO3C028735.1mRNA