MELO3C028717.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C028717.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGirdin-like
Locationchr01: 15552476 .. 15553619 (+)
RNA-Seq ExpressionMELO3C028717.jh1
SyntenyMELO3C028717.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAACACAATCAGTGAGTTTGGTATGGCAGTTTGGGATCCAACATATCCAAGGAAGGAGGCTTGGTTGTCTTTCTTTGCAAAACTGACTTCTGAAAATGTCATATGGAGGGCTCAATTGATGCCTTTGAAGGCGGTGATATATAGATGTAGAGATTTTACAGTGTGCTTTTATTGGGACTATGGGAGGTCTTAACTATACACCATTGTTAGTTTTGTGTCAGGTGTGGCTCAAACAGTTTAGACCACCAACTCATAATGTGCAAGAGTCTGACTTTTCATACGATCCTGAAGATTGTTAAGGGAAAAAACGTCAAACAGTATGCGCATGAAAATCTGTAAGAAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGGCATGGCTGGCAAACAGAAGGAAAAATATAATACTTATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAGTGGATTGAGAAAAGTATAGAACTAGAAGAGAAAAATTAACTGTTAAAGGAAGATAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATGATGCAACTTATTTACAGAACGAACTCGAAAAGACTAAGAGTTTCTTAAGAAGTCAAGATAAGTTAGAAAAGAATCTTGAGACAATAGATAAGGAGATGTGACAAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAACAGAGGGTTGCAAGATGAATATATTAAAGATTTAGAAAGTGGGATGGAATATTTTCTCGAGCTGGTCAATGATTTGAATACATCAATTGGGAAACGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTACGTCAAACTGTTGATAGCCTACATCTGAAGATGGCCGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCAATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAAGAATATGAGTCATTAAAGACGGATTACATGCAAATGAAGTTTGGTTATGATCTGCAAATGAGAGATTTCCAAGTGCTAGTGAAACATGTAGATCATACGATTGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATG

mRNA sequence

ATGTGCAACACAATCAGTGAGTTTGGTATGGCAGTTTGGGATCCAACATATCCAAGGAAGGAGGCTTGGTTGTCTTTCTTTGCAAAACTGACTTCTGAAAATGTCATATGGAGGGCTCAATTGATGCCTTTGAAGGCGGTGATATATAGATGTAGAGATTTTACAGTGTGCTTTTATTGGGACTATGGGAGGTCTTAACTATACACCATTGTTAGTTTTGTGTCAGGTGTGGCTCAAACAGTTTAGACCACCAACTCATAATGTGCAAGAGTCTGACTTTTCATACGATCCTGAAGATTGTTAAGGGAAAAAACGTCAAACAGTATGCGCATGAAAATCTGTAAGAAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGGCATGGCTGGCAAACAGAAGGAAAAATATAATACTTATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAGTGGATTGAGAAAAGTATAGAACTAGAAGAGAAAAATTAACTGTTAAAGGAAGATAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATGATGCAACTTATTTACAGAACGAACTCGAAAAGACTAAGAGTTTCTTAAGAAGTCAAGATAAGTTAGAAAAGAATCTTGAGACAATAGATAAGGAGATGTGACAAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAACAGAGGGTTGCAAGATGAATATATTAAAGATTTAGAAAGTGGGATGGAATATTTTCTCGAGCTGGTCAATGATTTGAATACATCAATTGGGAAACGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTACGTCAAACTGTTGATAGCCTACATCTGAAGATGGCCGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCAATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAAGAATATGAGTCATTAAAGACGGATTACATGCAAATGAAGTTTGGTTATGATCTGCAAATGAGAGATTTCCAAGTGCTAGTGAAACATGTAGATCATACGATTGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATG

Coding sequence (CDS)

ATGGAATATTTTCTCGAGCTGGTCAATGATTTGAATACATCAATTGGGAAACGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTACGTCAAACTGTTGATAGCCTACATCTGAAGATGGCCGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCAATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAAGAATATGAGTCATTAAAGACGGATTACATGCAAATGAAGTTTGGTTATGATCTGCAAATGAGAGATTTCCAAGTGCTAGTGAAACATGTAGATCATACGATTGAATTTCTCAGAATGGTGTCCAAAAGAGCAAAT

Protein sequence

MEYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNSLHYQLTAFQNSSERIVQEYESLKTDYMQMKFGYDLQMRDFQVLVKHVDHTIEFLRMVSKRAN
Homology
[Close]
BLAST of MELO3C028717.jh1 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (527), Expect = 5.04e-64
Identity = 106/120 (88.33%), Postives = 110/120 (91.67%), Query Frame = 0 

Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNSLH 61
           EYFLELVNDLNTSIGKRETQIMDLEA NHSL QTVDSLHLKMAERSEEYEILKNYV+SLH
Sbjct: 165 EYFLELVNDLNTSIGKRETQIMDLEAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDSLH 224

Query: 62  YQLTAFQNSSERIVQEYESLKTDYMQMKFGYDLQMRDFQVLVKHVDHTIEFLRMVSKRAN 121
           YQLTA QNSS+RI QEYESL TDY+QMK  YDLQ RDFQVLV+ VD TIEFLRMVSKRAN
Sbjct: 225 YQLTALQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRAN 284

[Close]
BLAST of MELO3C028717.jh1 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (526), Expect = 2.69e-63
Identity = 105/120 (87.50%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNSLH 61
           EYFLELVNDLNTSIGKRETQIMDLEA NHSLRQTVD+LHLKMAERSEEYEILKNYV+SLH
Sbjct: 213 EYFLELVNDLNTSIGKRETQIMDLEAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDSLH 272

Query: 62  YQLTAFQNSSERIVQEYESLKTDYMQMKFGYDLQMRDFQVLVKHVDHTIEFLRMVSKRAN 121
           YQLTA QNSS+RI QEYESL TDY+QMK  YDLQ RDFQVLV+ VD TIEFLRM+SKRAN
Sbjct: 273 YQLTALQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMMSKRAN 332

[Close]
BLAST of MELO3C028717.jh1 vs. NCBI nr
Match: KAA0062685.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (516), Expect = 4.38e-62
Identity = 105/120 (87.50%), Postives = 107/120 (89.17%), Query Frame = 0 

Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNSLH 61
           EYFLE VNDLNTSIGKRETQIMDLEA NHSLRQTVDSLHLKMAE SEEYEILKNYV SLH
Sbjct: 188 EYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYVESLH 247

Query: 62  YQLTAFQNSSERIVQEYESLKTDYMQMKFGYDLQMRDFQVLVKHVDHTIEFLRMVSKRAN 121
           YQLTA QNSS RI QEYESL TDY+QMK  YDLQ RDFQVLV+ VD TIEFLRMVSKRAN
Sbjct: 248 YQLTALQNSSRRITQEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRAN 307

[Close]
BLAST of MELO3C028717.jh1 vs. NCBI nr
Match: KAA0037780.1 (girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (510), Expect = 1.66e-61
Identity = 102/120 (85.00%), Postives = 109/120 (90.83%), Query Frame = 0 

Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNSLH 61
           EYFLELVNDLNTSI KRETQIMDLEA NHSLRQT+D+LHLKMAERSEEYEILKNY +SLH
Sbjct: 172 EYFLELVNDLNTSIVKRETQIMDLEAQNHSLRQTIDNLHLKMAERSEEYEILKNYADSLH 231

Query: 62  YQLTAFQNSSERIVQEYESLKTDYMQMKFGYDLQMRDFQVLVKHVDHTIEFLRMVSKRAN 121
           +QLTA QNSS+RI QEYESL TDY+QMK  YDLQ RDFQVLV+ VD TIEFLRMVSKRAN
Sbjct: 232 FQLTAHQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRAN 291

[Close]
BLAST of MELO3C028717.jh1 vs. NCBI nr
Match: KAA0060422.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (502), Expect = 1.87e-61
Identity = 101/120 (84.17%), Postives = 106/120 (88.33%), Query Frame = 0 

Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNSLH 61
           EYFLE VNDLNTSIGKRETQIMDLEA NHSLRQTVDSLHLKMAE SEEYEILKNY +SLH
Sbjct: 71  EYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADSLH 130

Query: 62  YQLTAFQNSSERIVQEYESLKTDYMQMKFGYDLQMRDFQVLVKHVDHTIEFLRMVSKRAN 121
           YQLTA QNSS RI QEYESL  DY+QMK  YD++ RDFQVLV+ VD TIEFLRMVSKRAN
Sbjct: 131 YQLTALQNSSRRITQEYESLNIDYVQMKVDYDMETRDFQVLVERVDQTIEFLRMVSKRAN 190

[Close]
BLAST of MELO3C028717.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 207 bits (527), Expect = 2.44e-64
Identity = 106/120 (88.33%), Postives = 110/120 (91.67%), Query Frame = 0 

Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNSLH 61
           EYFLELVNDLNTSIGKRETQIMDLEA NHSL QTVDSLHLKMAERSEEYEILKNYV+SLH
Sbjct: 165 EYFLELVNDLNTSIGKRETQIMDLEAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDSLH 224

Query: 62  YQLTAFQNSSERIVQEYESLKTDYMQMKFGYDLQMRDFQVLVKHVDHTIEFLRMVSKRAN 121
           YQLTA QNSS+RI QEYESL TDY+QMK  YDLQ RDFQVLV+ VD TIEFLRMVSKRAN
Sbjct: 225 YQLTALQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRAN 284

[Close]
BLAST of MELO3C028717.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)

HSP 1 Score: 207 bits (526), Expect = 1.30e-63
Identity = 105/120 (87.50%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNSLH 61
           EYFLELVNDLNTSIGKRETQIMDLEA NHSLRQTVD+LHLKMAERSEEYEILKNYV+SLH
Sbjct: 213 EYFLELVNDLNTSIGKRETQIMDLEAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDSLH 272

Query: 62  YQLTAFQNSSERIVQEYESLKTDYMQMKFGYDLQMRDFQVLVKHVDHTIEFLRMVSKRAN 121
           YQLTA QNSS+RI QEYESL TDY+QMK  YDLQ RDFQVLV+ VD TIEFLRM+SKRAN
Sbjct: 273 YQLTALQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMMSKRAN 332

[Close]
BLAST of MELO3C028717.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V9X6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 PE=4 SV=1)

HSP 1 Score: 203 bits (516), Expect = 2.12e-62
Identity = 105/120 (87.50%), Postives = 107/120 (89.17%), Query Frame = 0 

Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNSLH 61
           EYFLE VNDLNTSIGKRETQIMDLEA NHSLRQTVDSLHLKMAE SEEYEILKNYV SLH
Sbjct: 188 EYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYVESLH 247

Query: 62  YQLTAFQNSSERIVQEYESLKTDYMQMKFGYDLQMRDFQVLVKHVDHTIEFLRMVSKRAN 121
           YQLTA QNSS RI QEYESL TDY+QMK  YDLQ RDFQVLV+ VD TIEFLRMVSKRAN
Sbjct: 248 YQLTALQNSSRRITQEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRAN 307

[Close]
BLAST of MELO3C028717.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DUG2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 PE=4 SV=1)

HSP 1 Score: 201 bits (510), Expect = 8.05e-62
Identity = 102/120 (85.00%), Postives = 109/120 (90.83%), Query Frame = 0 

Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNSLH 61
           EYFLELVNDLNTSI KRETQIMDLEA NHSLRQT+D+LHLKMAERSEEYEILKNY +SLH
Sbjct: 172 EYFLELVNDLNTSIVKRETQIMDLEAQNHSLRQTIDNLHLKMAERSEEYEILKNYADSLH 231

Query: 62  YQLTAFQNSSERIVQEYESLKTDYMQMKFGYDLQMRDFQVLVKHVDHTIEFLRMVSKRAN 121
           +QLTA QNSS+RI QEYESL TDY+QMK  YDLQ RDFQVLV+ VD TIEFLRMVSKRAN
Sbjct: 232 FQLTAHQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRAN 291

[Close]
BLAST of MELO3C028717.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UX37 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE=4 SV=1)

HSP 1 Score: 197 bits (502), Expect = 9.05e-62
Identity = 101/120 (84.17%), Postives = 106/120 (88.33%), Query Frame = 0 

Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNSLH 61
           EYFLE VNDLNTSIGKRETQIMDLEA NHSLRQTVDSLHLKMAE SEEYEILKNY +SLH
Sbjct: 71  EYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADSLH 130

Query: 62  YQLTAFQNSSERIVQEYESLKTDYMQMKFGYDLQMRDFQVLVKHVDHTIEFLRMVSKRAN 121
           YQLTA QNSS RI QEYESL  DY+QMK  YD++ RDFQVLV+ VD TIEFLRMVSKRAN
Sbjct: 131 YQLTALQNSSRRITQEYESLNIDYVQMKVDYDMETRDFQVLVERVDQTIEFLRMVSKRAN 190

The following BLAST results are available for this feature:
BLAST of MELO3C028717.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK23632.15.04e-6488.33girdin-like [Cucumis melo var. makuwa][more]
TYK18656.12.69e-6387.50girdin-like [Cucumis melo var. makuwa][more]
KAA0062685.14.38e-6287.50girdin-like [Cucumis melo var. makuwa][more]
KAA0037780.11.66e-6185.00girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var... [more]
KAA0060422.11.87e-6184.17girdin-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C028717.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028717.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DJ952.44e-6488.33Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P... [more]
A0A5D3D5331.30e-6387.50Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE... [more]
A0A5A7V9X62.12e-6287.50Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 P... [more]
A0A5D3DUG28.05e-6285.00Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 P... [more]
A0A5A7UX379.05e-6284.17Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE... [more]
BLAST of MELO3C028717.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.5.1700coord: 7..90
e-value: 7.1E-6
score: 28.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028717.jh1.t1MELO3C028717.jh1.t1mRNA