MELO3C028709 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028709
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CACTA en-spm transposon protein
Location	chr08: 20945833 .. 20946520 (-)
RNA-Seq Expression	MELO3C028709
Synteny	MELO3C028709

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATGGTGGCTATCGTGTAGTTATGGTAGCCTCTGTAGTTTGAAGTTAGTTTTAGTGAAAAGTTTGGGAGATTGTTTATTAGGGGAGTAAGTTTAGGATGTAGGAGGGGGAATATACTTCTAATCAAACCTATTTATGTTTTAAGGGCTTTAACCATGGACAAGAGTTGGATGAAAATTATGAATAAGTTTTTCATTGAGTATAGAGAGAGAGTGACCCAATTTTTAGAAGTTGTCAAGTTTCACGTTGATGCCTACGGACGAATAAGGTGTCCATGCAAGAGATGTATAAACTTAAATTCAAACTCAATAGAGGTGTGGAACGACATCTACTTACTATTGGAATATCCCCTACTACACAGAATGAGTGTATTACAGAGAGTCAGTTAGCTTTAGAGGTACAGAAAATTTTGATGAAGAAACTAGTAGTAACCCTTTCAATGAAGGAACTAATAGTAGGCACTTTCATGAAAAAGGTGATATGTTTGGTATGCTGAATGATTTACAAGCGCCGATTGAATAGGAAGAGGAAACAGAGGAAGAGAAAACAGATGAAATACCGAGAAATATTGGGTAGATAAAAAACAAGATACAACAAACATAATTTTGGACTTATTGAATGAAGCACATAATGAGTTGTACCCCAATAGTTCTGAATTTTTCTCCTTCAAGTTTTTGTTTAAGTTAA

mRNA sequence

GTTATGGTGGCTATCGTGTAGTTATGGGGCTTTAACCATGGACAAGAGTTGGATGAAAATTATGAATAAGTTTTTCATTGAGTATAGAGAGAGAGTGACCCAATTTTTAGAAGTTGTCAAGTTTCACGTTGATGCCTACGGACGAATAAGGTGTCCATGCAAGAGATGTATAAACTTAAATTCAAACTCAATAGAGGTGTGGAACGACATCTACTTACTATTGGAATATCCCCTACTACACAGAATGAGTGTATTACAGAGAGTCAGTTAGCTTTAGAGGTACAGAAAATTTTGATGAAGAAACTAGTAGTAACCCTTTCAATGAAGGAACTAATAGTAGGCACTTTCATGAAAAAGGTGATATGTTTGGTATGCTGAATGATTTACAAGCGCCGATTGAATAGGAAGAGGAAACAGAGGAAGAGAAAACAGATGAAATACCGAGAAATATTGGGTAGATAAAAAACAAGATACAACAAACATAATTTTGGACTTATTGAATGAAGCACATAATGAGTTGTACCCCAATAGTTCTGAATTTTTCTCCTTCAAGTTTTTGTTTAAGTTAA

Coding sequence (CDS)

ATGGACAAGAGTTGGATGAAAATTATGAATAAGTTTTTCATTGAGTATAGAGAGAGAGTGACCCAATTTTTAGAAGTTGTCAAGTTTCACGTTGATGCCTACGGACGAATAAGGTGTCCATGCAAGAGATGTATAAACTTAAATTCAAACTCAATAGAGGTGTGGAACGACATCTACTTACTATTGGAATATCCCCTACTACACAGAATGAGTGTATTACAGAGAGTCAGTTAG

Protein sequence

MDKSWMKIMNKFFIEYRERVTQFLEVVKFHVDAYGRIRCPCKRCINLNSNSIEVWNDIYLLLEYPLLHRMSVLQRVS

Homology

[Close]

BLAST of MELO3C028709 vs. NCBI nr
Match: KAA0056542.1 (uncharacterized protein E6C27_scaffold288G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   MDKSWMKIMNKFFIEYRERVTQFLEVVKFHVDAYGRIRCPCKRCINLNSNSIE 54
           MDK WMK+ NK F+EYR  VTQFLE  KFHVDAYGR+RCPCKRC+NLN +S+E
Sbjct: 214 MDKGWMKLRNKLFLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLE 266

[Close]

BLAST of MELO3C028709 vs. NCBI nr
Match: TYK23363.1 (hypothetical protein E5676_scaffold142G004270 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 3.1e-15
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1  MDKSWMKIMNKFFIEYRERVTQFLEVVKFHVDAYGRIRCPCKRCINLNSNSIE 54
          MDK WMK+ NKF +EYR  VTQFLE VKF+VDAYGR+RCPCKRC+NLN +S+E
Sbjct: 1  MDKDWMKLRNKFSLEYRHGVTQFLEFVKFYVDAYGRLRCPCKRCLNLNWSSLE 53

[Close]

BLAST of MELO3C028709 vs. NCBI nr
Match: KAA0062995.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 6.8e-15
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1   MDKSWMKIMNKFFIEYRERVTQFLEVVKFHVDAYGRIRCPCKRCINLNSNSIE 54
           MDK WMK+ NK  +EYR  VTQFLE  KFHVDAYGR+RCPCKRC+NLN +S+E
Sbjct: 291 MDKGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNLSSLE 343

[Close]

BLAST of MELO3C028709 vs. NCBI nr
Match: KAA0040340.1 (hypothetical protein E6C27_scaffold460G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 8.9e-15
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1  MDKSWMKIMNKFFIEYRERVTQFLEVVKFHVDAYGRIRCPCKRCINLNSNSIE 54
          MDK WMK+ NKF +EYR  VTQFLE  KF+VDAYGR+RCPCKRC+NLN +S+E
Sbjct: 1  MDKDWMKLRNKFSLEYRHGVTQFLEFAKFYVDAYGRLRCPCKRCLNLNWSSLE 53

[Close]

BLAST of MELO3C028709 vs. NCBI nr
Match: TYK16353.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 8.9e-15
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MDKSWMKIMNKFFIEYRERVTQFLEVVKFHVDAYGRIRCPCKRCINLNSNSIE 54
          MDK WMK+ NK  +EYR  VTQFLE  KFHVDAYGR+RCPCKRC+NLN +S+E
Sbjct: 1  MDKGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLE 53

[Close]

BLAST of MELO3C028709 vs. ExPASy TrEMBL
Match: A0A5A7UL57 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00420 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.1e-16
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   MDKSWMKIMNKFFIEYRERVTQFLEVVKFHVDAYGRIRCPCKRCINLNSNSIE 54
           MDK WMK+ NK F+EYR  VTQFLE  KFHVDAYGR+RCPCKRC+NLN +S+E
Sbjct: 214 MDKGWMKLRNKLFLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLE 266

[Close]

BLAST of MELO3C028709 vs. ExPASy TrEMBL
Match: A0A5D3DIE6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004270 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1  MDKSWMKIMNKFFIEYRERVTQFLEVVKFHVDAYGRIRCPCKRCINLNSNSIE 54
          MDK WMK+ NKF +EYR  VTQFLE VKF+VDAYGR+RCPCKRC+NLN +S+E
Sbjct: 1  MDKDWMKLRNKFSLEYRHGVTQFLEFVKFYVDAYGRLRCPCKRCLNLNWSSLE 53

[Close]

BLAST of MELO3C028709 vs. ExPASy TrEMBL
Match: A0A5A7VAR5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00950 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-15
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1   MDKSWMKIMNKFFIEYRERVTQFLEVVKFHVDAYGRIRCPCKRCINLNSNSIE 54
           MDK WMK+ NK  +EYR  VTQFLE  KFHVDAYGR+RCPCKRC+NLN +S+E
Sbjct: 291 MDKGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNLSSLE 343

[Close]

BLAST of MELO3C028709 vs. ExPASy TrEMBL
Match: A0A5D3BP89 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00540 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.3e-15
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1   MDKSWMKIMNKFFIEYRERVTQFLEVVKFHVDAYGRIRCPCKRCINLNSNSIE 54
           MDK WMK+ NK  +EYR  VTQFLE  KFHVDAYGR+RCPCKRC+NLN +S+E
Sbjct: 58  MDKGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLE 110

[Close]

BLAST of MELO3C028709 vs. ExPASy TrEMBL
Match: A0A5D3CWU5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001370 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.3e-15
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MDKSWMKIMNKFFIEYRERVTQFLEVVKFHVDAYGRIRCPCKRCINLNSNSIE 54
          MDK WMK+ NK  +EYR  VTQFLE  KFHVDAYGR+RCPCKRC+NLN +S+E
Sbjct: 1  MDKGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLE 53

The following BLAST results are available for this feature:

BLAST of MELO3C028709 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056542.1	1.0e-15	73.58	uncharacterized protein E6C27_scaffold288G00420 [Cucumis melo var. makuwa]	[more]
TYK23363.1	3.1e-15	73.58	hypothetical protein E5676_scaffold142G004270 [Cucumis melo var. makuwa]	[more]
KAA0062995.1	6.8e-15	71.70	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0040340.1	8.9e-15	71.70	hypothetical protein E6C27_scaffold460G00450 [Cucumis melo var. makuwa]	[more]
TYK16353.1	8.9e-15	71.70	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028709 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028709 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UL57	5.1e-16	73.58	Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DIE6	1.5e-15	73.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VAR5	3.3e-15	71.70	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BP89	4.3e-15	71.70	Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CWU5	4.3e-15	71.70	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C028709 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029480	Transposase-associated domain	PFAM	PF13963	Transpos_assoc	coord: 3..50 e-value: 8.0E-10 score: 38.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028709.1	MELO3C028709.1	mRNA