MELO3C028673 (gene) Melon (DHL92) v4

Overview
NameMELO3C028673
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionprotein TRANSPORT INHIBITOR RESPONSE 1
Locationchr01: 25310289 .. 25310803 (-)
RNA-Seq ExpressionMELO3C028673
SyntenyMELO3C028673
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGCTAACTGTTGACTGAACCAGGAATTTGAAAGTATTGGACTTACGAGGGAGTGATGTGGAAGATCTGAATGGGCATTGGCTCAGCCATTTTCCTGATACATATACGTCATTGGTATCTCTCAATATTGCTTGTTTGGGGTCTGAGGTGAGTGTATCAGCACTGAAGCGTCTAGTGGACAGGTGTCCAAACTTAAGGACACTGCATCTCAATCGTCCAGTTCCCCTTGATAGGCATGCCAACCTACTTCGTCGTGCCCCTCAGCTGGTTGAGTTTGGTGCTGGATGCTATATGGCTGACTTGAGATCTGAAGTTTTTTCGAGCTTAACTGGGGCATTTACAAGCTGCACAGAATTGAAGAGTCTGTCAGGATTTTGGGATGTTGTCCCTGCATACCTTCCTTTCGTTTATCCAACATGCTCTCGGCTAACATCCTTAAACTTAAGCTATGCTACAATTCATGTGACGATCTTACAAAGCTTATCAGTCAATGTCATAATTTACAGAAGCTTTGG

mRNA sequence

CGGCTAACTGTTGACTGAACCAGGAATTTGAAAGTATTGGACTTACGAGGGAGTGATGTGGAAGATCTGAATGGGCATTGGCTCAGCCATTTTCCTGATACATATACGTCATTGGTATCTCTCAATATTGCTTGTTTGGGGTCTGAGGTGAGTGTATCAGCACTGAAGCGTCTAGTGGACAGGTGTCCAAACTTAAGGACACTGCATCTCAATCGTCCAGTTCCCCTTGATAGGCATGCCAACCTACTTCGTCGTGCCCCTCAGCTGGTTGAGTTTGGTGCTGGATGCTATATGGCTGACTTGAGATCTGAAGTTTTTTCGAGCTTAACTGGGGCATTTACAAGCTGCACAGAATTGAAGAGTCTGTCAGGATTTTGGGATGTTGTCCCTGCATACCTTCCTTTCGTTTATCCAACATGCTCTCGGCTAACATCCTTAAACTTAAGCTATGCTACAATTCATGTGACGATCTTACAAAGCTTATCAGTCAATGTCATAATTTACAGAAGCTTTGG

Coding sequence (CDS)

ATGGCTGACTTGAGATCTGAAGTTTTTTCGAGCTTAACTGGGGCATTTACAAGCTGCACAGAATTGAAGAGTCTGTCAGGATTTTGGGATGTTGTCCCTGCATACCTTCCTTTCGTTTATCCAACATGCTCTCGGCTAACATCCTTAAACTTAAGCTATGCTACAATTCATGTGACGATCTTACAAAGCTTATCAGTCAATGTCATAATTTACAGAAGCTTT

Protein sequence

MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTILQSLSVNVIIYRSF
Homology
BLAST of MELO3C028673 vs. NCBI nr
Match: XP_008451438.1 (PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 3.6e-21
Identity = 57/64 (89.06%), Postives = 57/64 (89.06%), Query Frame = 0

Query: 1   MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTI 60
           MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLP VYPTCSRLTSLNLSYATI    
Sbjct: 245 MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSRLTSLNLSYATIQCDD 304

Query: 61  LQSL 65
           L  L
Sbjct: 305 LTKL 308

BLAST of MELO3C028673 vs. NCBI nr
Match: XP_038876726.1 (protein TRANSPORT INHIBITOR RESPONSE 1-like [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           ADLRSEVFSSLTGAFT+CTELKSLSGFWDVVPAYLP VYPTCSRLTSLNLSYATI    L
Sbjct: 246 ADLRSEVFSSLTGAFTNCTELKSLSGFWDVVPAYLPSVYPTCSRLTSLNLSYATIQCDDL 305

Query: 62  QSL 65
             L
Sbjct: 306 TKL 308

BLAST of MELO3C028673 vs. NCBI nr
Match: NP_001267546.1 (protein TRANSPORT INHIBITOR RESPONSE 1-like [Cucumis sativus] >AGA63733.1 transport inhibitor response 1 [Cucumis sativus] >AGI15227.1 transport inhibitor response protein [Cucumis sativus] >KGN44877.1 hypothetical protein Csa_016512 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 4.0e-20
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLP VYPTCS+LTSLNLSYATI    L
Sbjct: 246 ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSQLTSLNLSYATIQCDDL 305

Query: 62  QSL 65
             L
Sbjct: 306 TKL 308

BLAST of MELO3C028673 vs. NCBI nr
Match: XP_022953789.1 (protein TRANSPORT INHIBITOR RESPONSE 1-like [Cucurbita moschata])

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 54/63 (85.71%), Postives = 55/63 (87.30%), Query Frame = 0

Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           ADLRSEVFS+LTGAFTSCTELKSLSGFWDVVPAYLP VYPTCSRLTSLNLSYA I    L
Sbjct: 246 ADLRSEVFSNLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSRLTSLNLSYAIIQCDDL 305

Query: 62  QSL 65
             L
Sbjct: 306 TKL 308

BLAST of MELO3C028673 vs. NCBI nr
Match: KAG7014398.1 (Protein TRANSPORT INHIBITOR RESPONSE 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 54/63 (85.71%), Postives = 55/63 (87.30%), Query Frame = 0

Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           ADLRSEVFS+LTGAFTSCTELKSLSGFWDVVPAYLP VYPTCSRLTSLNLSYA I    L
Sbjct: 258 ADLRSEVFSNLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSRLTSLNLSYAIIQCDDL 317

Query: 62  QSL 65
             L
Sbjct: 318 TKL 320

BLAST of MELO3C028673 vs. ExPASy Swiss-Prot
Match: Q570C0 (Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 7.5e-14
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATI 57
           A++R +V+S L+ A + C EL+ LSGFWD VPAYLP VY  CSRLT+LNLSYAT+
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301

BLAST of MELO3C028673 vs. ExPASy Swiss-Prot
Match: Q9ZR12 (GRR1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=GRH1 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-12
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           A L+ E FS L+ AF++C +L+SLSG WDV+P YLP +Y  C  LTSLNLSYAT+ +  L
Sbjct: 243 AQLKPEAFSKLSEAFSNCKQLQSLSGLWDVLPEYLPALYSVCPGLTSLNLSYATVRMPDL 302

Query: 62  QSL 65
             L
Sbjct: 303 VEL 305

BLAST of MELO3C028673 vs. ExPASy Swiss-Prot
Match: Q0DKP3 (Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0150500 PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-10
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATI 57
           AD  S++F+ L  AF  C  L+ LSG WD VP YLP  Y  C  LTSLNLSYAT+
Sbjct: 258 ADYHSDLFAKLEAAFGGCKSLRRLSGAWDAVPDYLPAFYCVCEGLTSLNLSYATV 312

BLAST of MELO3C028673 vs. ExPASy Swiss-Prot
Match: Q7XVM8 (Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-09
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 3   DLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYA 55
           D ++E +  LT A   C  L+SLSGFWD  P  L F+YP C++LT LNLSYA
Sbjct: 243 DFQTESYFKLTSALEKCKMLRSLSGFWDASPVCLSFIYPLCAQLTGLNLSYA 294

BLAST of MELO3C028673 vs. ExPASy Swiss-Prot
Match: Q9LTX2 (Transport inhibitor response 1-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g49980 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-06
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0

Query: 5   RSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTILQSL 64
           +SE       AF +C  +  LSGF +++P YLP ++P C+ LTSLN SYA I   + + +
Sbjct: 297 QSEQEPDYAAAFRACKSVVCLSGFRELMPEYLPAIFPVCANLTSLNFSYANISPDMFKPI 356

Query: 65  SVN 68
            +N
Sbjct: 357 ILN 359

BLAST of MELO3C028673 vs. ExPASy TrEMBL
Match: A0A1S3BRJ6 (protein TRANSPORT INHIBITOR RESPONSE 1 OS=Cucumis melo OX=3656 GN=LOC103492732 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 57/64 (89.06%), Postives = 57/64 (89.06%), Query Frame = 0

Query: 1   MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTI 60
           MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLP VYPTCSRLTSLNLSYATI    
Sbjct: 245 MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSRLTSLNLSYATIQCDD 304

Query: 61  LQSL 65
           L  L
Sbjct: 305 LTKL 308

BLAST of MELO3C028673 vs. ExPASy TrEMBL
Match: M1GCN5 (Transport inhibitor response 1 OS=Cucumis sativus OX=3659 GN=Csa_7G393970 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLP VYPTCS+LTSLNLSYATI    L
Sbjct: 246 ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSQLTSLNLSYATIQCDDL 305

Query: 62  QSL 65
             L
Sbjct: 306 TKL 308

BLAST of MELO3C028673 vs. ExPASy TrEMBL
Match: A0A6J1GQR4 (protein TRANSPORT INHIBITOR RESPONSE 1-like OS=Cucurbita moschata OX=3662 GN=LOC111456212 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.3e-20
Identity = 54/63 (85.71%), Postives = 55/63 (87.30%), Query Frame = 0

Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           ADLRSEVFS+LTGAFTSCTELKSLSGFWDVVPAYLP VYPTCSRLTSLNLSYA I    L
Sbjct: 246 ADLRSEVFSNLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSRLTSLNLSYAIIQCDDL 305

Query: 62  QSL 65
             L
Sbjct: 306 TKL 308

BLAST of MELO3C028673 vs. ExPASy TrEMBL
Match: A0A5A7UGH2 (Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001820 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-19
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1   MADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTI 60
           MADLRSEVFSSLTGAFTSC ELKSLSGFW+VVPA+LP VYPTCSRLTSLNLSYA I    
Sbjct: 304 MADLRSEVFSSLTGAFTSCIELKSLSGFWNVVPAFLPSVYPTCSRLTSLNLSYAIIQCDD 363

Query: 61  LQSLS 66
           L  L+
Sbjct: 364 LTKLN 368

BLAST of MELO3C028673 vs. ExPASy TrEMBL
Match: A0A6J1KSA8 (protein TRANSPORT INHIBITOR RESPONSE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111497784 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.6e-19
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = 0

Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           ADLRS+VFS+LT AFTSCTELKSLSGFWDVVPAYLP VYPTCSRLTSLNLSYATI    L
Sbjct: 246 ADLRSDVFSNLTTAFTSCTELKSLSGFWDVVPAYLPSVYPTCSRLTSLNLSYATIQSDDL 305

Query: 62  QSL 65
             L
Sbjct: 306 TKL 308

BLAST of MELO3C028673 vs. TAIR 10
Match: AT3G62980.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 5.3e-15
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATI 57
           A++R +V+S L+ A + C EL+ LSGFWD VPAYLP VY  CSRLT+LNLSYAT+
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301

BLAST of MELO3C028673 vs. TAIR 10
Match: AT4G03190.1 (GRR1-like protein 1 )

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-13
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 2   ADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTIL 61
           A L+ E FS L+ AF++C +L+SLSG WDV+P YLP +Y  C  LTSLNLSYAT+ +  L
Sbjct: 243 AQLKPEAFSKLSEAFSNCKQLQSLSGLWDVLPEYLPALYSVCPGLTSLNLSYATVRMPDL 302

Query: 62  QSL 65
             L
Sbjct: 303 VEL 305

BLAST of MELO3C028673 vs. TAIR 10
Match: AT5G49980.1 (auxin F-box protein 5 )

HSP 1 Score: 52.8 bits (125), Expect = 1.4e-07
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0

Query: 5   RSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYATIHVTILQSL 64
           +SE       AF +C  +  LSGF +++P YLP ++P C+ LTSLN SYA I   + + +
Sbjct: 297 QSEQEPDYAAAFRACKSVVCLSGFRELMPEYLPAIFPVCANLTSLNFSYANISPDMFKPI 356

Query: 65  SVN 68
            +N
Sbjct: 357 ILN 359

BLAST of MELO3C028673 vs. TAIR 10
Match: AT1G12820.1 (auxin signaling F-box 3 )

HSP 1 Score: 50.4 bits (119), Expect = 7.0e-07
Identity = 26/48 (54.17%), Postives = 29/48 (60.42%), Query Frame = 0

Query: 7   EVFSSLTGAFTSCTELKSLSGFWDVVPAYLPFVYPTCSRLTSLNLSYA 55
           E F+ L  A    T L+SLSGF +V P  LP  YP C  L SLNLSYA
Sbjct: 247 ESFAKLMTAIKKYTSLRSLSGFLEVAPLCLPAFYPICQNLISLNLSYA 294

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008451438.13.6e-2189.06PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Cucumis melo][more]
XP_038876726.13.0e-2087.30protein TRANSPORT INHIBITOR RESPONSE 1-like [Benincasa hispida][more]
NP_001267546.14.0e-2087.30protein TRANSPORT INHIBITOR RESPONSE 1-like [Cucumis sativus] >AGA63733.1 transp... [more]
XP_022953789.11.5e-1985.71protein TRANSPORT INHIBITOR RESPONSE 1-like [Cucurbita moschata][more]
KAG7014398.11.5e-1985.71Protein TRANSPORT INHIBITOR RESPONSE 1, partial [Cucurbita argyrosperma subsp. a... [more]
Match NameE-valueIdentityDescription
Q570C07.5e-1463.64Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 P... [more]
Q9ZR122.4e-1255.56GRR1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=GRH1 PE=1 SV=1[more]
Q0DKP33.0e-1056.36Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. ... [more]
Q7XVM81.5e-0953.85Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. ... [more]
Q9LTX22.0e-0639.68Transport inhibitor response 1-like protein OS=Arabidopsis thaliana OX=3702 GN=A... [more]
Match NameE-valueIdentityDescription
A0A1S3BRJ61.7e-2189.06protein TRANSPORT INHIBITOR RESPONSE 1 OS=Cucumis melo OX=3656 GN=LOC103492732 P... [more]
M1GCN51.9e-2087.30Transport inhibitor response 1 OS=Cucumis sativus OX=3659 GN=Csa_7G393970 PE=2 S... [more]
A0A6J1GQR47.3e-2085.71protein TRANSPORT INHIBITOR RESPONSE 1-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A5A7UGH22.8e-1981.54Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6J1KSA83.6e-1984.13protein TRANSPORT INHIBITOR RESPONSE 1-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
Match NameE-valueIdentityDescription
AT3G62980.15.3e-1563.64F-box/RNI-like superfamily protein [more]
AT4G03190.11.7e-1355.56GRR1-like protein 1 [more]
AT5G49980.11.4e-0739.68auxin F-box protein 5 [more]
AT1G12820.17.0e-0754.17auxin signaling F-box 3 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 1..68
e-value: 3.1E-12
score: 47.6
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 5.0
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 9..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028673.1MELO3C028673.1mRNA