MELO3C028668 (gene) Melon (DHL92) v4

Overview
NameMELO3C028668
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein Ycf2-like
Locationchr01: 10236474 .. 10236765 (+)
RNA-Seq ExpressionMELO3C028668
SyntenyMELO3C028668
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCATCAAAGCGAAAGATGCCTAGGATCAAGGTTGAAACTTATCAAACCAAACAAGGATGATCCAATTCTGATTGACAATAATACAGAGATATATCTTTAAGTTTCTAAAGGTGTATTTGAAATGGTATAAATCATTAAACAAAATATAATATGTATAGATATGGTAGGAGGAAGATAGATATGAAGGACCAATTCAGTATGAACCACTGCAAACTATATATCCAGACGATGTTGAACAATAGTTAAGAGGACCTACAGGTACACAAATTGTGGTGTACCAGGATCAG

mRNA sequence

ATGGTGCATCAAAGCGAAAGATGCCTAGGATCAAGGTTGAAACTTATCAAACCAAACAAGGATGATCCAATTCTGATTGACAATAATACAGAGGAGGAAGATAGATATGAAGGACCAATTCAGTATGAACCACTGCAAACTATATATCCAGACGATGTTGAACAATAGTTAAGAGGACCTACAGGTACACAAATTGTGGTGTACCAGGATCAG

Coding sequence (CDS)

ATGGTGCATCAAAGCGAAAGATGCCTAGGATCAAGGTTGAAACTTATCAAACCAAACAAGGATGATCCAATTCTGATTGACAATAATACAGAGGAGGAAGATAGATATGAAGGACCAATTCAGTATGAACCACTGCAAACTATATATCCAGACGATGTTGAACAATAG

Protein sequence

MVHQSERCLGSRLKLIKPNKDDPILIDNNTEEEDRYEGPIQYEPLQTIYPDDVEQ
Homology
BLAST of MELO3C028668 vs. NCBI nr
Match: KAA0043162.1 (uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK12303.1 uncharacterized protein E5676_scaffold302G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 9.2e-14
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 1  MVHQSERCLGSRLKLIKPNKDDPILIDNNTEEEDRYEGPIQYEPLQTIYPDDVEQ 56
          MV +SERCLG +LK+IK NKDDPI+I +NTEEE RYE PIQYEPLQTIY DD EQ
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQ 55

BLAST of MELO3C028668 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 5.2e-09
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1  MVHQSERCLGSRLKLIKPNKDDPILIDNNTEEEDRYEGPIQYEPLQTIYPDDVEQ 56
          MV +SERCLGSRLK IK +KD+ ILI++N EE+ R E P+ Y+P+Q IYP D E+
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEE 55

BLAST of MELO3C028668 vs. ExPASy TrEMBL
Match: A0A5A7TIM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00690 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-14
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 1  MVHQSERCLGSRLKLIKPNKDDPILIDNNTEEEDRYEGPIQYEPLQTIYPDDVEQ 56
          MV +SERCLG +LK+IK NKDDPI+I +NTEEE RYE PIQYEPLQTIY DD EQ
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQ 55

BLAST of MELO3C028668 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1  MVHQSERCLGSRLKLIKPNKDDPILIDNNTEEEDRYEGPIQYEPLQTIYPDDVEQ 56
          MV +SERCLGSRLK IK +KD+ ILI++N EE+ R E P+ Y+P+Q IYP D E+
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEE 55

BLAST of MELO3C028668 vs. ExPASy TrEMBL
Match: A0A1S3CM64 (uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502558 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.4e-04
Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 11  SRLKLIKPNKDDPILIDNNTEEEDRYEGPIQYEPLQTIYPDDVEQ 56
           ++LK IK +KD+ ILI++N EE+ R E P+ Y+P+QTIYP D E+
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEE 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0043162.19.2e-1476.36uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK1... [more]
TYK30586.15.2e-0960.00protein Ycf2-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TIM34.4e-1476.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E3X12.5e-0960.00Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00... [more]
A0A1S3CM645.4e-0453.33uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028668.1MELO3C028668.1mRNA