MELO3C028613 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028613
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Polyprotein
Location	chr01: 5130471 .. 5130842 (-)
RNA-Seq Expression	MELO3C028613
Synteny	MELO3C028613

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTCCCCAAGCTCTTAGACTGGAGCGAGCTAACCCGCAATCCGGTCTGGTCAATCGAGCACGCAACTGCCCTTAGAACAAGGCAAAGCAATACGGCTCAAATAATCGAATATGATGATGGGCATGTCAAAGTCCAATTTCAAGAAGAACCCCATCAGCCCCCAATTAGAGAGATATATAGTGGACGGTCTAGTGTTTCAGAATATCTACCAACCACTAGGGAAAGACCAATTCCCAGGTCTACTTCAATGAGAATGGTCGTGAATTTTGAACAATCCATTCCAGACGTACAATATGAGAAGTCTAAGGGATCTTTGTCGCCTACTCAAACTGACATGGAAAGAAGATCTTGAGATATATATAACCAG

mRNA sequence

ATGATGGTCCCCAAGCTCTTAGACTGGAGCGAGCTAACCCGCAATCCGGTCTGGTCAATCGAGCACGCAACTGCCCTTAGAACAAGGCAAAGCAATACGGCTCAAATAATCGAATATGATGATGGGCATGTCAAAGTCCAATTTCAAGAAGAACCCCATCAGCCCCCAATTAGAGAGATATATAGTGGACGGTCTAGTGTTTCAGAATATCTACCAACCACTAGGGAAAGACCAATTCCCAGGTCTACTTCAATGAGAATGGTCGTGAATTTTGAACAATCCATTCCAGACGTACAATATGAGAAGTCTAAGGGATCTTTGTCGCCTACTCAAACTGACATGGAAAGAAGATCTTGAGATATATATAACCAG

Coding sequence (CDS)

ATGATGGTCCCCAAGCTCTTAGACTGGAGCGAGCTAACCCGCAATCCGGTCTGGTCAATCGAGCACGCAACTGCCCTTAGAACAAGGCAAAGCAATACGGCTCAAATAATCGAATATGATGATGGGCATGTCAAAGTCCAATTTCAAGAAGAACCCCATCAGCCCCCAATTAGAGAGATATATAGTGGACGGTCTAGTGTTTCAGAATATCTACCAACCACTAGGGAAAGACCAATTCCCAGGTCTACTTCAATGAGAATGGTCGTGAATTTTGAACAATCCATTCCAGACGTACAATATGAGAAGTCTAAGGGATCTTTGTCGCCTACTCAAACTGACATGGAAAGAAGATCTTGA

Protein sequence

MMVPKLLDWSELTRNPVWSIEHATALRTRQSNTAQIIEYDDGHVKVQFQEEPHQPPIREIYSGRSSVSEYLPTTRERPIPRSTSMRMVVNFEQSIPDVQYEKSKGSLSPTQTDMERRS

Homology

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BLAST of MELO3C028613 vs. NCBI nr
Match: KAA0050634.1 (hypothetical protein E6C27_scaffold673G001010 [Cucumis melo var. makuwa] >TYK07799.1 hypothetical protein E5676_scaffold1737G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-53
Identity = 110/118 (93.22%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MMVPKLLDWSELTRNPVWSIEHATALRTRQSNTAQIIEYDDGHVKVQFQEEPHQPPIREI 60
           MMVPKLLDWSELTRN VWSIEHATA RTRQSNTAQIIEYDDGHV+VQFQEEPHQPPIREI
Sbjct: 12  MMVPKLLDWSELTRNSVWSIEHATAPRTRQSNTAQIIEYDDGHVEVQFQEEPHQPPIREI 71

Query: 61  YSGRSSVSEYLPTTRERPIPRSTSMRMVVNFEQSIPDVQYEKSKGSLSPTQTDMERRS 119
           YSGRSSVSEY PTTRERPI  STSMRM V+FEQSIPDVQYEKSKGSLSPTQTDMERRS
Sbjct: 72  YSGRSSVSEYRPTTRERPILMSTSMRMAVDFEQSIPDVQYEKSKGSLSPTQTDMERRS 129

[Close]

BLAST of MELO3C028613 vs. NCBI nr
Match: KAA0050195.1 (polyprotein [Cucumis melo var. makuwa] >TYJ98214.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 4.1e-43
Identity = 95/118 (80.51%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MMVPKLLDWSELTRNPVWSIEHATALRTRQSNTAQIIEYDDGHVKVQFQEEPHQPPIREI 60
           M V KLL+WSELT NPVW+IEHAT  RTRQS+T QIIEY DGHV+VQFQEEPHQPP REI
Sbjct: 1   MTVLKLLNWSELTCNPVWTIEHATVPRTRQSSTTQIIEY-DGHVEVQFQEEPHQPPNREI 60

Query: 61  YSGRSSVSEYLPTTRERPIPRSTSMRMVVNFEQSIPDVQYEKSKGSLSPTQTDMERRS 119
            SGRSS+SEY PTTRERPI +S SMRM+V+FEQSIPD QYEKS+GSLSPTQT MERRS
Sbjct: 61  CSGRSSISEYRPTTRERPITKSNSMRMLVDFEQSIPDEQYEKSEGSLSPTQTAMERRS 117

[Close]

BLAST of MELO3C028613 vs. NCBI nr
Match: KAA0049723.1 (polyprotein [Cucumis melo var. makuwa] >TYK12152.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-39
Identity = 85/111 (76.58%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MMVPKLLDWSELTRNPVWSIEHATALRTRQSNTAQIIEYDDGHVKVQFQEEPHQPPIREI 60
           M VPKLLDWS+LTRNPVW+IEH T  RTR+S+TAQI EYDDGHV+VQFQEEPH PPIREI
Sbjct: 12  MTVPKLLDWSQLTRNPVWTIEHVTTPRTRKSSTAQITEYDDGHVEVQFQEEPHHPPIREI 71

Query: 61  YSGRSSVSEYLPTTRERPIPRSTSMRMVVNFEQSIPDVQYEKSKGSLSPTQ 112
           Y+GRSSVSEY PTTRERPIPRS SMRM V+FEQ IPDVQ    K +L+P +
Sbjct: 72  YNGRSSVSEYQPTTRERPIPRSNSMRMSVDFEQFIPDVQ----KKTLAPLE 118

[Close]

BLAST of MELO3C028613 vs. NCBI nr
Match: KAA0050620.1 (hypothetical protein E6C27_scaffold673G00840 [Cucumis melo var. makuwa] >TYK07820.1 hypothetical protein E5676_scaffold1737G001150 [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 6.1e-31
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MMVPKLLDWSELTRNPVWSIEHATALRTRQSNTAQIIEYDDGHVKVQFQEEPHQPPIREI 60
          M +PKLLDWSELTRN +WSIEHAT  RTRQS+ AQI EYDDGHV+VQFQEE HQPPIREI
Sbjct: 12 MTIPKLLDWSELTRNSIWSIEHATVFRTRQSSMAQITEYDDGHVEVQFQEESHQPPIREI 71

Query: 61 YSGRSSVSEYLPTTRERPIPRS 83
          YSGRSSVS+Y PTTRERP+P+S
Sbjct: 72 YSGRSSVSKYQPTTRERPLPQS 93

[Close]

BLAST of MELO3C028613 vs. NCBI nr
Match: KAA0056802.1 (polyprotein [Cucumis melo var. makuwa] >TYJ99926.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-28
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 27  RTRQSNTAQIIEYDDGHVKVQFQEEPHQPPIREIYSGRSSVSEYLPTTRERPIPRSTSMR 86
           RTRQS+T QI EYDD HV+VQFQEEP+  PIREIYS RSS+SE  PTTRERPI RS SMR
Sbjct: 109 RTRQSSTTQIFEYDDAHVEVQFQEEPYHLPIREIYSERSSISECRPTTRERPIARSNSMR 168

Query: 87  MVVNFEQSIPDVQYEKSKGSLSPTQTDMERRS 119
           M ++ EQSI DVQYEKS+GS SPTQTDMER+S
Sbjct: 169 MSMDLEQSILDVQYEKSEGSWSPTQTDMERKS 200

[Close]

BLAST of MELO3C028613 vs. ExPASy TrEMBL
Match: A0A5D3CBV5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00910 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 9.4e-54
Identity = 110/118 (93.22%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MMVPKLLDWSELTRNPVWSIEHATALRTRQSNTAQIIEYDDGHVKVQFQEEPHQPPIREI 60
           MMVPKLLDWSELTRN VWSIEHATA RTRQSNTAQIIEYDDGHV+VQFQEEPHQPPIREI
Sbjct: 12  MMVPKLLDWSELTRNSVWSIEHATAPRTRQSNTAQIIEYDDGHVEVQFQEEPHQPPIREI 71

Query: 61  YSGRSSVSEYLPTTRERPIPRSTSMRMVVNFEQSIPDVQYEKSKGSLSPTQTDMERRS 119
           YSGRSSVSEY PTTRERPI  STSMRM V+FEQSIPDVQYEKSKGSLSPTQTDMERRS
Sbjct: 72  YSGRSSVSEYRPTTRERPILMSTSMRMAVDFEQSIPDVQYEKSKGSLSPTQTDMERRS 129

[Close]

BLAST of MELO3C028613 vs. ExPASy TrEMBL
Match: A0A5A7U9B4 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001110 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.0e-43
Identity = 95/118 (80.51%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MMVPKLLDWSELTRNPVWSIEHATALRTRQSNTAQIIEYDDGHVKVQFQEEPHQPPIREI 60
           M V KLL+WSELT NPVW+IEHAT  RTRQS+T QIIEY DGHV+VQFQEEPHQPP REI
Sbjct: 1   MTVLKLLNWSELTCNPVWTIEHATVPRTRQSSTTQIIEY-DGHVEVQFQEEPHQPPNREI 60

Query: 61  YSGRSSVSEYLPTTRERPIPRSTSMRMVVNFEQSIPDVQYEKSKGSLSPTQTDMERRS 119
            SGRSS+SEY PTTRERPI +S SMRM+V+FEQSIPD QYEKS+GSLSPTQT MERRS
Sbjct: 61  CSGRSSISEYRPTTRERPITKSNSMRMLVDFEQSIPDEQYEKSEGSLSPTQTAMERRS 117

[Close]

BLAST of MELO3C028613 vs. ExPASy TrEMBL
Match: A0A5D3CLG3 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00900 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.3e-39
Identity = 85/111 (76.58%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MMVPKLLDWSELTRNPVWSIEHATALRTRQSNTAQIIEYDDGHVKVQFQEEPHQPPIREI 60
           M VPKLLDWS+LTRNPVW+IEH T  RTR+S+TAQI EYDDGHV+VQFQEEPH PPIREI
Sbjct: 12  MTVPKLLDWSQLTRNPVWTIEHVTTPRTRKSSTAQITEYDDGHVEVQFQEEPHHPPIREI 71

Query: 61  YSGRSSVSEYLPTTRERPIPRSTSMRMVVNFEQSIPDVQYEKSKGSLSPTQ 112
           Y+GRSSVSEY PTTRERPIPRS SMRM V+FEQ IPDVQ    K +L+P +
Sbjct: 72  YNGRSSVSEYQPTTRERPIPRSNSMRMSVDFEQFIPDVQ----KKTLAPLE 118

[Close]

BLAST of MELO3C028613 vs. ExPASy TrEMBL
Match: A0A5D3C908 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001150 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MMVPKLLDWSELTRNPVWSIEHATALRTRQSNTAQIIEYDDGHVKVQFQEEPHQPPIREI 60
          M +PKLLDWSELTRN +WSIEHAT  RTRQS+ AQI EYDDGHV+VQFQEE HQPPIREI
Sbjct: 12 MTIPKLLDWSELTRNSIWSIEHATVFRTRQSSMAQITEYDDGHVEVQFQEESHQPPIREI 71

Query: 61 YSGRSSVSEYLPTTRERPIPRS 83
          YSGRSSVS+Y PTTRERP+P+S
Sbjct: 72 YSGRSSVSKYQPTTRERPLPQS 93

[Close]

BLAST of MELO3C028613 vs. ExPASy TrEMBL
Match: A0A5A7ULT7 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00510 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 8.0e-29
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 27  RTRQSNTAQIIEYDDGHVKVQFQEEPHQPPIREIYSGRSSVSEYLPTTRERPIPRSTSMR 86
           RTRQS+T QI EYDD HV+VQFQEEP+  PIREIYS RSS+SE  PTTRERPI RS SMR
Sbjct: 109 RTRQSSTTQIFEYDDAHVEVQFQEEPYHLPIREIYSERSSISECRPTTRERPIARSNSMR 168

Query: 87  MVVNFEQSIPDVQYEKSKGSLSPTQTDMERRS 119
           M ++ EQSI DVQYEKS+GS SPTQTDMER+S
Sbjct: 169 MSMDLEQSILDVQYEKSEGSWSPTQTDMERKS 200

The following BLAST results are available for this feature:

BLAST of MELO3C028613 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050634.1	1.9e-53	93.22	hypothetical protein E6C27_scaffold673G001010 [Cucumis melo var. makuwa] >TYK077...	[more]
KAA0050195.1	4.1e-43	80.51	polyprotein [Cucumis melo var. makuwa] >TYJ98214.1 polyprotein [Cucumis melo var...	[more]
KAA0049723.1	2.7e-39	76.58	polyprotein [Cucumis melo var. makuwa] >TYK12152.1 polyprotein [Cucumis melo var...	[more]
KAA0050620.1	6.1e-31	81.71	hypothetical protein E6C27_scaffold673G00840 [Cucumis melo var. makuwa] >TYK0782...	[more]
KAA0056802.1	1.7e-28	76.09	polyprotein [Cucumis melo var. makuwa] >TYJ99926.1 polyprotein [Cucumis melo var...	[more]

BLAST of MELO3C028613 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028613 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CBV5	9.4e-54	93.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9B4	2.0e-43	80.51	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001110 P...	[more]
A0A5D3CLG3	1.3e-39	76.58	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00900 PE...	[more]
A0A5D3C908	2.9e-31	81.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7ULT7	8.0e-29	76.09	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00510 PE...	[more]

BLAST of MELO3C028613 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..112
None	No IPR available	PANTHER	PTHR46249:SF33	VIRAL MOVEMENT PROTEIN-RELATED	coord: 7..118
None	No IPR available	PANTHER	PTHR46249	FAMILY NOT NAMED	coord: 7..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028613.1	MELO3C028613.1	mRNA