MELO3C028598 (gene) Melon (DHL92) v4

Overview
NameMELO3C028598
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein FAR1-RELATED SEQUENCE 4
Locationchr11: 11228433 .. 11229572 (-)
RNA-Seq ExpressionMELO3C028598
SyntenyMELO3C028598
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACTGAATATAGGTTCTTCTTCTTTTGTTACAAATGATGACGTTATAAGAGACATCACTTATTATTCTGATTTGAAGGAAAAATGTTTATTTGAAAGTAAAGAAGTGCTTTCAAAGTATTTTTGCATAATAGCAGTGAATACCAACTTTCAATTTAGGACTACAGTATCAAATTTTGAGGTCTCTTGAATTTAGATGTCTGCAAAAAAGGCTGCAAATGGTATGTAACAGCATCTCATTATAAGAAGAGTGATTTGTGGATGCTACGAAAAATATACTTCTGACCATGATTGTTTATTGAGTATTACCCAAAGTTCTGAGATCTCTTGAGTTTAGGACTACAGTATCAAATTTTGAGGTCTTTTGAATTTAGATGTCTGCAAAAAAGGCTGCAAATGGTATGTAACGGCATCTCATTATAAGAAGAGTGATTTGTGGATGCTACGAAAAATATACTTCTGACCATGATTGTTTATTGAGTACTACACAAAGTTCTGACATGCAAGCTTCTTCAACCATAATTGGCAATTGTTTGATAGATGATTTTAAATTCATGTCTACTGATCATTTCATTCCTAAAGAGATTGTGTATAAGGCTCGTACAAATCTTGGAGTTAATATAAGATACCAAAAAGCTTGGAGGGCGAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCGTATGCATTGATTCTAAGATTCTTTGATAAATTGGTTGAATCTAACCCAGGTACGATCAGTTTTGTGTATCAAATTTAAATTCATTTGCAAATAGATGTGGGTAGACTAATATCATAGGCTATCTAGATAAACCAATATTAGCATCTTTCATATTCTTTCTACTCTTTTTTATTTGTTGTAATTATTATAGGTATATGAACTGCTTTAGAATTGGATGATAGTGGTCATTTTAAGTTTTACTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTACACCTATTATTTCTGTTAATGAGACATTTTTGAAGTGTAAGTTCGGTAGCATCCTATTAACAGCCTCATTATAAGATGGTAAAAATCAAATCTCCCTTTTGCTTTTGCCATTGTAGATTTTGAAAATGATGTATCATGGACATGGTTTTTTAAGAATATACAA

mRNA sequence

ATGTCACTGAATATAGGTTCTTCTTCTTTTGTTACAAATGATGACGTTATAAGAGACATCACTTATTATTCTGATTTGAAGGAAAAATGTTTATTTGAAAGTAAAGAAGTGCTTTCAAAGTATTTTTGCATAATAGCAGTGAATACCAACTTTCAATTTAGGACTACAGTATCAAATTTTGAGGTCTCTTGAATTTAGATGTCTGCAAAAAAGGCTGCAAATGGTATGTAACAGCATCTCATTATAAGAAGAGTGATTTGTGGATGCTACGAAAAATATACTTCTGACCATGATTGTTTATTGAGTATTACCCAAAGATGATTTTAAATTCATGTCTACTGATCATTTCATTCCTAAAGAGATTGTGTATAAGGCTCGTACAAATCTTGGAGTTAATATAAGATACCAAAAAGCTTGGAGGGCGAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCGTATGCATTGATTCTAAGATTCTTTGATAAATTGGTTGAATCTAACCCAGGTATATGAACTGCTTTAGAATTGGATGATAGTGGTCATTTTAAGTTTTACTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTACACCTATTATTTCTGTTAATGAGACATTTTTGAAGTGTAAGTTCGGTAGCATCCTATTAACAGCCTCATTATAAGATGGTAAAAATCAAATCTCCCTTTTGCTTTTGCCATTGTAGATTTTGAAAATGATGTATCATGGACATGGTTTTTTAAGAATATACAA

Coding sequence (CDS)

ATGTCTACTGATCATTTCATTCCTAAAGAGATTGTGTATAAGGCTCGTACAAATCTTGGAGTTAATATAAGATACCAAAAAGCTTGGAGGGCGAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCGTATGCATTGATTCTAAGATTCTTTGATAAATTGGTTGAATCTAACCCAGGTATATGA

Protein sequence

MSTDHFIPKEIVYKARTNLGVNIRYQKAWRAKEHMVKILHGDTVESYALILRFFDKLVESNPGI
Homology
[Close]
BLAST of MELO3C028598 vs. NCBI nr
Match: TYK31656.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 3.0e-24
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 1  MSTDHFIPKEIVYKARTNLGVNIRYQKAWRAKEHMVKILHGDTVESYALILRFFDKLVES 60
          MSTD FIPKEIV+KARTNLGVNI YQKAWRAKE MVKILHGDTVESYALI RFFDKLVES
Sbjct: 19 MSTDRFIPKEIVHKARTNLGVNISYQKAWRAKERMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61 NPG 64
          NPG
Sbjct: 79 NPG 81

[Close]
BLAST of MELO3C028598 vs. NCBI nr
Match: KAA0064043.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa] >TYK26195.1 protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 5.1e-24
Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 0 

Query: 1  MSTDHFIPKEIVYKARTNLGVNIRYQKAWRAKEHMVKILHGDTVESYALILRFFDKLVES 60
          MSTDH IPKEIV+KARTNLGVNI YQKAWRAKEHMVKILHGD  ESYALI RFFDKLVES
Sbjct: 24 MSTDHSIPKEIVHKARTNLGVNISYQKAWRAKEHMVKILHGDRAESYALIPRFFDKLVES 83

Query: 61 NPG 64
          NPG
Sbjct: 84 NPG 86

[Close]
BLAST of MELO3C028598 vs. NCBI nr
Match: KAA0051085.1 (uncharacterized protein E6C27_scaffold511G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-23
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 1  MSTDHFIPKEIVYKARTNLGVNIRYQKAWRAKEHMVKILHGDTVESYALILRFFDKLVES 60
          MSTD FIPKEIV+KARTNLGVNI YQKAWRAKE+MVKILHG+TVE YALI RFFDKLVES
Sbjct: 19 MSTDRFIPKEIVHKARTNLGVNISYQKAWRAKEYMVKILHGNTVELYALIPRFFDKLVES 78

Query: 61 NPGI 65
          NPGI
Sbjct: 79 NPGI 82

[Close]
BLAST of MELO3C028598 vs. NCBI nr
Match: TYK02726.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-23
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 1   MSTDHFIPKEIVYKARTNLGVNIRYQKAWRAKEHMVKILHGDTVESYALILRFFDKLVES 60
           MSTD FIPKEIV+KARTNLGVNI YQKAWRAKE+MVKILHG+TVE YALI RFFDKLVES
Sbjct: 461 MSTDRFIPKEIVHKARTNLGVNISYQKAWRAKEYMVKILHGNTVELYALIPRFFDKLVES 520

Query: 61  NPGI 65
           NPGI
Sbjct: 521 NPGI 524

[Close]
BLAST of MELO3C028598 vs. NCBI nr
Match: KAA0063987.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 5.6e-23
Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 1   MSTDHFIPKEIVYKARTNLGVNIRYQKAWRAKEHMVKILHGDTVESYALILRFFDKLVES 60
           MSTD  IPKEIV+KARTNLGVNI YQKAWR KEHMVKILHGDTVESYALI RFFDKLVES
Sbjct: 657 MSTDRSIPKEIVHKARTNLGVNISYQKAWRVKEHMVKILHGDTVESYALIPRFFDKLVES 716

Query: 61  NP 63
           NP
Sbjct: 717 NP 718

[Close]
BLAST of MELO3C028598 vs. ExPASy TrEMBL
Match: A0A5D3E7I2 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00060 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 1  MSTDHFIPKEIVYKARTNLGVNIRYQKAWRAKEHMVKILHGDTVESYALILRFFDKLVES 60
          MSTD FIPKEIV+KARTNLGVNI YQKAWRAKE MVKILHGDTVESYALI RFFDKLVES
Sbjct: 19 MSTDRFIPKEIVHKARTNLGVNISYQKAWRAKERMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61 NPG 64
          NPG
Sbjct: 79 NPG 81

[Close]
BLAST of MELO3C028598 vs. ExPASy TrEMBL
Match: A0A5A7V7F3 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001240 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.5e-24
Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 0 

Query: 1  MSTDHFIPKEIVYKARTNLGVNIRYQKAWRAKEHMVKILHGDTVESYALILRFFDKLVES 60
          MSTDH IPKEIV+KARTNLGVNI YQKAWRAKEHMVKILHGD  ESYALI RFFDKLVES
Sbjct: 24 MSTDHSIPKEIVHKARTNLGVNISYQKAWRAKEHMVKILHGDRAESYALIPRFFDKLVES 83

Query: 61 NPG 64
          NPG
Sbjct: 84 NPG 86

[Close]
BLAST of MELO3C028598 vs. ExPASy TrEMBL
Match: A0A5D3BWW9 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00240 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.2e-24
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 1   MSTDHFIPKEIVYKARTNLGVNIRYQKAWRAKEHMVKILHGDTVESYALILRFFDKLVES 60
           MSTD FIPKEIV+KARTNLGVNI YQKAWRAKE+MVKILHG+TVE YALI RFFDKLVES
Sbjct: 461 MSTDRFIPKEIVHKARTNLGVNISYQKAWRAKEYMVKILHGNTVELYALIPRFFDKLVES 520

Query: 61  NPGI 65
           NPGI
Sbjct: 521 NPGI 524

[Close]
BLAST of MELO3C028598 vs. ExPASy TrEMBL
Match: A0A5A7UBT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G00240 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.2e-24
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 1  MSTDHFIPKEIVYKARTNLGVNIRYQKAWRAKEHMVKILHGDTVESYALILRFFDKLVES 60
          MSTD FIPKEIV+KARTNLGVNI YQKAWRAKE+MVKILHG+TVE YALI RFFDKLVES
Sbjct: 19 MSTDRFIPKEIVHKARTNLGVNISYQKAWRAKEYMVKILHGNTVELYALIPRFFDKLVES 78

Query: 61 NPGI 65
          NPGI
Sbjct: 79 NPGI 82

[Close]
BLAST of MELO3C028598 vs. ExPASy TrEMBL
Match: A0A5D3BN82 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00270 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.7e-23
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 1  MSTDHFIPKEIVYKARTNLGVNIRYQKAWRAKEHMVKILHGDTVESYALILRFFDKLVES 60
          +STD  IP+EIV+KARTNLGVNI YQKAWRAKEHMVKILHGDTVE+YALI RFFDKLVES
Sbjct: 19 ISTDRSIPQEIVHKARTNLGVNISYQKAWRAKEHMVKILHGDTVEAYALIPRFFDKLVES 78

Query: 61 NPG 64
          NPG
Sbjct: 79 NPG 81

The following BLAST results are available for this feature:
BLAST of MELO3C028598 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK31656.13.0e-2492.06MuDRA-like transposase [Cucumis melo var. makuwa][more]
KAA0064043.15.1e-2490.48protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa] >TYK26195.1 protein F... [more]
KAA0051085.11.5e-2389.06uncharacterized protein E6C27_scaffold511G00240 [Cucumis melo var. makuwa][more]
TYK02726.11.5e-2389.06retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0063987.15.6e-2390.32gag protease polyprotein [Cucumis melo var. makuwa][more]
BLAST of MELO3C028598 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028598 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E7I21.4e-2492.06MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3... [more]
A0A5A7V7F32.5e-2490.48Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3BWW97.2e-2489.06Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7UBT77.2e-2489.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BN822.7e-2387.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C028598 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028598.1MELO3C028598.1mRNA