MELO3C028525 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028525
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr01: 22840649 .. 22840987 (-)
RNA-Seq Expression	MELO3C028525
Synteny	MELO3C028525

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCGTACGCATCGAGCCCGTGCAACGCTCGGCTATCCGCGCCCTTACGCTGCATTAAAGCAAGCAGGGTCGCAGAGTCGCCGCGCGAGGCCGAGCACGGAACGTCGTGCGCGCGCTCGATATGAGCATTGTGTAACCCACATGAACATTGCAACCGAAACACCGTCATTGTTATGGGACGAGCCCTTTCGTCAAACGGGGATCGATCGCAGCATGTCCAGTCTCGACAGAGGAAAGCATGCCGAGAACACGCCCGCAACGAGGTGCAAGCATTATCCAAGCAAGCCCATCCCCCACCTCACCGCACATCCCGCTCTCTATCCCCGCCCGACGTAG

mRNA sequence

ATGCGCCGTACGCATCGAGCCCGTGCAACGCTCGGCTATCCGCGCCCTTACGCTGCATTAAAGCAAGCAGGGTCGCAGAGTCGCCGCGCGAGGCCGAGCACGGAACGTCGTGCGCGCGCTCGATATGAGCATTGTGTAACCCACATGAACATTGCAACCGAAACACCGTCATTGTTATGGGACGAGCCCTTTCGTCAAACGGGGATCGATCGCAGCATGTCCAGTCTCGACAGAGGAAAGCATGCCGAGAACACGCCCGCAACGAGGTGCAAGCATTATCCAAGCAAGCCCATCCCCCACCTCACCGCACATCCCGCTCTCTATCCCCGCCCGACGTAG

Coding sequence (CDS)

ATGCGCCGTACGCATCGAGCCCGTGCAACGCTCGGCTATCCGCGCCCTTACGCTGCATTAAAGCAAGCAGGGTCGCAGAGTCGCCGCGCGAGGCCGAGCACGGAACGTCGTGCGCGCGCTCGATATGAGCATTGTGTAACCCACATGAACATTGCAACCGAAACACCGTCATTGTTATGGGACGAGCCCTTTCGTCAAACGGGGATCGATCGCAGCATGTCCAGTCTCGACAGAGGAAAGCATGCCGAGAACACGCCCGCAACGAGGTGCAAGCATTATCCAAGCAAGCCCATCCCCCACCTCACCGCACATCCCGCTCTCTATCCCCGCCCGACGTAG

Protein sequence

MRRTHRARATLGYPRPYAALKQAGSQSRRARPSTERRARARYEHCVTHMNIATETPSLLWDEPFRQTGIDRSMSSLDRGKHAENTPATRCKHYPSKPIPHLTAHPALYPRPT

Homology

[Close]

BLAST of MELO3C028525 vs. NCBI nr
Match: TYK03168.1 (hypothetical protein E5676_scaffold11G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 51/73 (69.86%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 28  RRARPSTERRA----RARYEHCVTHMNIATETPSLLWDEPFRQTGIDRSMSSLDRGKHAE 87
           R  R + + RA    RARYEHCVTH+ IATETPSLLWDEPFRQ GID SMSSLDRGKHA+
Sbjct: 33  RGCRVAAQGRARNVVRARYEHCVTHVKIATETPSLLWDEPFRQKGIDCSMSSLDRGKHAK 92

Query: 88  NTPATRCKHYPSK 97
           NTP TR  H  S+
Sbjct: 93  NTPVTRSNHKTSR 105

[Close]

BLAST of MELO3C028525 vs. ExPASy TrEMBL
Match: A0A5D3BW21 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00500 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.0e-18
Identity = 51/73 (69.86%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 28  RRARPSTERRA----RARYEHCVTHMNIATETPSLLWDEPFRQTGIDRSMSSLDRGKHAE 87
           R  R + + RA    RARYEHCVTH+ IATETPSLLWDEPFRQ GID SMSSLDRGKHA+
Sbjct: 33  RGCRVAAQGRARNVVRARYEHCVTHVKIATETPSLLWDEPFRQKGIDCSMSSLDRGKHAK 92

Query: 88  NTPATRCKHYPSK 97
           NTP TR  H  S+
Sbjct: 93  NTPVTRSNHKTSR 105

The following BLAST results are available for this feature:

BLAST of MELO3C028525 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03168.1	1.2e-17	69.86	hypothetical protein E5676_scaffold11G00500 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028525 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028525 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BW21	6.0e-18	69.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C028525 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028525.1	MELO3C028525.1	mRNA