MELO3C028522 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028522
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein Ycf2
Location	chr02: 23028826 .. 23029028 (-)
RNA-Seq Expression	MELO3C028522
Synteny	MELO3C028522

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTCAATCTGCTCTTCATAGACAAACTTGGGATTTGCTATCCCAGGTAAGATCGTTTCAGGATCATGCGATCCTTTTCTATCAGATAGGAAGGGCTGTTGCACAAAATGT

mRNA sequence

ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTCAATCTGCTCTTCATAGACAAACTTGGGATTTGCTATCCCAGGTAAGATCGTTTCAGGATCATGCGATCCTTTTCTATCAGATAGGAAGGGCTGTTGCACAAAATGT

Coding sequence (CDS)

ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTCAATCTGCTCTTCATAGACAAACTTGGGATTTGCTATCCCAGGTAAGATCGTTTCAGGATCATGCGATCCTTTTCTATCAGATAGGAAGGGCTGTTGCACAAAAT

Protein sequence

MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQIGRAVAQN

Homology

[Close]

BLAST of MELO3C028522 vs. NCBI nr
Match: ASY96395.1 (Ycf2 [Cucumis melo subsp. agrestis] >ASY96401.1 Ycf2 [Cucumis melo subsp. agrestis])

HSP 1 Score: 129.8 bits (325), Expect = 8.8e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI
Sbjct: 1838 MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 1897

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1898 GRAVAQN 1904

[Close]

BLAST of MELO3C028522 vs. NCBI nr
Match: QRW36598.1 (hypothetical chloroplast RF21 [Cucumis melo] >QRW36618.1 hypothetical chloroplast RF21 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 8.8e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI
Sbjct: 1840 MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 1899

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1900 GRAVAQN 1906

[Close]

BLAST of MELO3C028522 vs. NCBI nr
Match: ASY96830.1 (Ycf2 [Cucumis melo var. momordica] >ASY97004.1 Ycf2 [Cucumis melo var. cantalupo] >ASY97352.1 Ycf2 [Cucumis melo var. flexuosus] >ASY96836.1 Ycf2 [Cucumis melo var. momordica] >ASY97010.1 Ycf2 [Cucumis melo var. cantalupo])

HSP 1 Score: 129.8 bits (325), Expect = 8.8e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI
Sbjct: 1840 MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 1899

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1900 GRAVAQN 1906

[Close]

BLAST of MELO3C028522 vs. NCBI nr
Match: YP_004841827.1 (hypothetical chloroplast RF21 [Cucumis melo subsp. melo] >YP_004841847.1 hypothetical chloroplast RF21 [Cucumis melo subsp. melo] >YP_009860117.1 hypothetical chloroplast RF21 [Cucumis melo subsp. agrestis] >YP_009860137.1 hypothetical chloroplast RF21 [Cucumis melo subsp. agrestis] >ASY96656.1 Ycf2 [Cucumis melo var. conomon] >ASY96743.1 Ycf2 [Cucumis melo var. makuwa] >ASY96917.1 Ycf2 [Cucumis melo var. dudaim] >ASY97178.1 Ycf2 [Cucumis melo var. inodorus] >QJF46428.1 Ycf2 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 8.8e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI
Sbjct: 1840 MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 1899

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1900 GRAVAQN 1906

[Close]

BLAST of MELO3C028522 vs. NCBI nr
Match: KAA0063018.1 (putative chloroplast RF21 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 2.6e-26
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1   MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
           MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI
Sbjct: 527 MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 586

Query: 61  GRAVAQN 68
           GR VAQN
Sbjct: 587 GRVVAQN 593

[Close]

BLAST of MELO3C028522 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-27
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQKKSIIDTNII+SALHRQTWDL SQVRS QDH ILFYQI
Sbjct: 1840 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1899

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1900 GRAVAQN 1906

[Close]

BLAST of MELO3C028522 vs. ExPASy Swiss-Prot
Match: A4GYV4 (Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-27
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQKKSIIDTNII+SALHRQTWDL SQVRS QDH ILFYQI
Sbjct: 1843 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1902

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1903 GRAVAQN 1909

[Close]

BLAST of MELO3C028522 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 9.1e-27
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQKKSIIDTNII+SA HRQTWDL SQVRS QDH ILFYQI
Sbjct: 1843 MGSNVRDLVALTNEALSISITQKKSIIDTNIIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1902

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1903 GRAVAQN 1909

[Close]

BLAST of MELO3C028522 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-26
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQ+KSIIDTNII+SALHRQTWDL SQVRS QDH ILFYQI
Sbjct: 1546 MGSNVRDLVALTNEALSISITQRKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQI 1605

Query: 61   GRAVAQN 68
            GRA+AQN
Sbjct: 1606 GRALAQN 1612

[Close]

BLAST of MELO3C028522 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-26
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQKKSI+DTN I+SALHRQTWDL SQVRS QDH ILFYQI
Sbjct: 1838 MGSNVRDLVALTNEALSISITQKKSILDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1897

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1898 GRAVAQN 1904

[Close]

BLAST of MELO3C028522 vs. ExPASy TrEMBL
Match: A0A249RYX8 (Protein Ycf2 OS=Cucumis melo var. momordica OX=2034244 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.3e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI
Sbjct: 1840 MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 1899

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1900 GRAVAQN 1906

[Close]

BLAST of MELO3C028522 vs. ExPASy TrEMBL
Match: G3ETW1 (Protein Ycf2 OS=Cucumis melo subsp. melo OX=412675 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.3e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI
Sbjct: 1840 MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 1899

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1900 GRAVAQN 1906

[Close]

BLAST of MELO3C028522 vs. ExPASy TrEMBL
Match: A0A249RZ46 (Protein Ycf2 OS=Cucumis melo var. dudaim OX=2034236 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.3e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI
Sbjct: 1840 MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 1899

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1900 GRAVAQN 1906

[Close]

BLAST of MELO3C028522 vs. ExPASy TrEMBL
Match: A0A1S4EU72 (Protein Ycf2 OS=Cucumis melo OX=3656 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.3e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI
Sbjct: 1840 MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 1899

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1900 GRAVAQN 1906

[Close]

BLAST of MELO3C028522 vs. ExPASy TrEMBL
Match: A0A249RZN4 (Protein Ycf2 OS=Cucumis melo var. cantalupensis OX=3658 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.3e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI
Sbjct: 1840 MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 1899

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1900 GRAVAQN 1906

[Close]

BLAST of MELO3C028522 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 116.3 bits (290), Expect = 9.4e-27
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGS+ RDLVALTNEALSISITQKKSIIDTN I+SALHRQTWDL SQVRS QDH ILFYQI
Sbjct: 1852 MGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1911

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1912 GRAVAQN 1918

[Close]

BLAST of MELO3C028522 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 116.3 bits (290), Expect = 9.4e-27
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1    MGSNVRDLVALTNEALSISITQKKSIIDTNIIQSALHRQTWDLLSQVRSFQDHAILFYQI 60
            MGS+ RDLVALTNEALSISITQKKSIIDTN I+SALHRQTWDL SQVRS QDH ILFYQI
Sbjct: 1852 MGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1911

Query: 61   GRAVAQN 68
            GRAVAQN
Sbjct: 1912 GRAVAQN 1918

The following BLAST results are available for this feature:

BLAST of MELO3C028522 vs. NCBI nr


Match Name	E-value	Identity	Description
ASY96395.1	8.8e-27	100.00	Ycf2 [Cucumis melo subsp. agrestis] >ASY96401.1 Ycf2 [Cucumis melo subsp. agrest...	[more]
QRW36598.1	8.8e-27	100.00	hypothetical chloroplast RF21 [Cucumis melo] >QRW36618.1 hypothetical chloroplas...	[more]
ASY96830.1	8.8e-27	100.00	Ycf2 [Cucumis melo var. momordica] >ASY97004.1 Ycf2 [Cucumis melo var. cantalupo...	[more]
YP_004841827.1	8.8e-27	100.00	hypothetical chloroplast RF21 [Cucumis melo subsp. melo] >YP_004841847.1 hypothe...	[more]
KAA0063018.1	2.6e-26	98.51	putative chloroplast RF21 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028522 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q14F97	3.1e-27	94.03	Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1	[more]
A4GYV4	3.1e-27	94.03	Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1	[more]
Q09WV7	9.1e-27	92.54	Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1	[more]
Q2QD30	1.6e-26	91.04	Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1	[more]
Q49KT6	2.0e-26	91.04	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]

BLAST of MELO3C028522 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A249RYX8	4.3e-27	100.00	Protein Ycf2 OS=Cucumis melo var. momordica OX=2034244 GN=ycf2 PE=3 SV=1	[more]
G3ETW1	4.3e-27	100.00	Protein Ycf2 OS=Cucumis melo subsp. melo OX=412675 GN=ycf2 PE=3 SV=1	[more]
A0A249RZ46	4.3e-27	100.00	Protein Ycf2 OS=Cucumis melo var. dudaim OX=2034236 GN=ycf2 PE=3 SV=1	[more]
A0A1S4EU72	4.3e-27	100.00	Protein Ycf2 OS=Cucumis melo OX=3656 GN=ycf2 PE=3 SV=1	[more]
A0A249RZN4	4.3e-27	100.00	Protein Ycf2 OS=Cucumis melo var. cantalupensis OX=3658 GN=ycf2 PE=3 SV=1	[more]

BLAST of MELO3C028522 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	9.4e-27	89.55	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	9.4e-27	89.55	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PANTHER	PTHR33078:SF22	PROTEIN YCF2	coord: 1..67
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028522.1	MELO3C028522.1	mRNA