MELO3C028517 (gene) Melon (DHL92) v4

Overview
NameMELO3C028517
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionBeta-galactosidase
Locationchr04: 25423704 .. 25423947 (-)
RNA-Seq ExpressionMELO3C028517
SyntenyMELO3C028517
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCTCGAAGGTCGCCACCGGTTCGACTTCTTAACTGGAGGGACTGTACGTCCTCTACCAGGAGACGCCTTGGAACGACTTGGAAAGGGGAGGACTCACTTATTCGGTCCATGTGATTAATGGTATGGAACCACAGATCGACAAGCCTCTACTATCTGCTTGCCACAGCAAAAGATTTGTGGGATACAACTCAAACCCTTACTCGAAAACGACAGAATGCCTCTCGGTTGTATACACTGCG

mRNA sequence

ATGTTCCTCGAAGGTCGCCACCGGTTCGACTTCTTAACTGGAGGGACTGTACGTCCTCTACCAGGAGACGCCTTGGAACGACTTGGAAAGGGGAGGACTCACTTATTCGGTCCATGTGATTAATGGTATGGAACCACAGATCGACAAGCCTCTACTATCTGCTTGCCACAGCAAAAGATTTGTGGGATACAACTCAAACCCTTACTCGAAAACGACAGAATGCCTCTCGGTTGTATACACTGCG

Coding sequence (CDS)

ATGTTCCTCGAAGGTCGCCACCGGTTCGACTTCTTAACTGGAGGGACTGTACGTCCTCTACCAGGAGACGCCTTGGAACGACTTGGAAAGGGGAGGACTCACTTATTCGGTCCATGTGATTAA

Protein sequence

MFLEGRHRFDFLTGGTVRPLPGDALERLGKGRTHLFGPCD
Homology
BLAST of MELO3C028517 vs. NCBI nr
Match: KAA0066678.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 3.2e-08
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 1  MFLEGRHRFDFLTGGTVRPLPGDALERLGKGRTHL 36
          MFLEGRH+FDFLTGGTVRPLPGDALERL KG   L
Sbjct: 1  MFLEGRHQFDFLTGGTVRPLPGDALERLWKGEDSL 35

BLAST of MELO3C028517 vs. NCBI nr
Match: KAA0048527.1 (transportin-3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 5.5e-08
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 1   MFLEGRHRFDFLTGGTVRPLPGDALERLGKGRTHLFG 38
           MFLEGR++F FLTG TVRP PGDALER GK RTHLFG
Sbjct: 145 MFLEGRYQFGFLTGETVRPPPGDALERSGKERTHLFG 181

BLAST of MELO3C028517 vs. NCBI nr
Match: KAA0054530.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYJ98266.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 1   MFLEGRHRFDFLTGGTVRPLPGDALERLGKGRTHLFG 38
           MFLEGRH+F FLTG TVRP P DALERL K RTHLFG
Sbjct: 152 MFLEGRHQFGFLTGETVRPSPRDALERLWKERTHLFG 188

BLAST of MELO3C028517 vs. NCBI nr
Match: KAA0064303.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  MFLEGRHRFDFLTGGTVRPLPGDALERLGKGRTHL 36
          MFLEGRHRFDFLTGGTVR LPGDALERL KG   L
Sbjct: 1  MFLEGRHRFDFLTGGTVRRLPGDALERLWKGEDSL 35

BLAST of MELO3C028517 vs. NCBI nr
Match: TYK19407.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 1   MFLEGRHRFDFLTGGTVRPLPGDALERLGKGRTHL 36
           MFLEGRH+FDFLTG TVRP PGDALERL KG   L
Sbjct: 185 MFLEGRHQFDFLTGETVRPSPGDALERLWKGEDSL 219

BLAST of MELO3C028517 vs. ExPASy TrEMBL
Match: A0A5A7VG04 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G00050 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-08
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 1  MFLEGRHRFDFLTGGTVRPLPGDALERLGKGRTHL 36
          MFLEGRH+FDFLTGGTVRPLPGDALERL KG   L
Sbjct: 1  MFLEGRHQFDFLTGGTVRPLPGDALERLWKGEDSL 35

BLAST of MELO3C028517 vs. ExPASy TrEMBL
Match: A0A5A7U2P7 (Transportin-3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001490 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-08
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 1   MFLEGRHRFDFLTGGTVRPLPGDALERLGKGRTHLFG 38
           MFLEGR++F FLTG TVRP PGDALER GK RTHLFG
Sbjct: 145 MFLEGRYQFGFLTGETVRPPPGDALERSGKERTHLFG 181

BLAST of MELO3C028517 vs. ExPASy TrEMBL
Match: A0A5D3BGV9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00090 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 1   MFLEGRHRFDFLTGGTVRPLPGDALERLGKGRTHLFG 38
           MFLEGRH+F FLTG TVRP P DALERL K RTHLFG
Sbjct: 152 MFLEGRHQFGFLTGETVRPSPRDALERLWKERTHLFG 188

BLAST of MELO3C028517 vs. ExPASy TrEMBL
Match: A0A5A7V851 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00020 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  MFLEGRHRFDFLTGGTVRPLPGDALERLGKGRTHL 36
          MFLEGRHRFDFLTGGTVR LPGDALERL KG   L
Sbjct: 1  MFLEGRHRFDFLTGGTVRRLPGDALERLWKGEDSL 35

BLAST of MELO3C028517 vs. ExPASy TrEMBL
Match: A0A5A7TQM8 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001630 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-07
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 1  MFLEGRHRFDFLTGGTVRPLPGDALERLGKGRTHL 36
          MFLEGRH+FDFLTG TVRP PGDALERL KG   L
Sbjct: 1  MFLEGRHQFDFLTGETVRPSPGDALERLWKGEDSL 35

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0066678.13.2e-0885.71UBN2_3 domain-containing protein [Cucumis melo var. makuwa][more]
KAA0048527.15.5e-0881.08transportin-3 isoform X1 [Cucumis melo var. makuwa][more]
KAA0054530.11.2e-0781.08Beta-galactosidase [Cucumis melo var. makuwa] >TYJ98266.1 Beta-galactosidase [Cu... [more]
KAA0064303.11.2e-0785.71Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK19407.11.3e-0680.00Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VG041.6e-0885.71UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5A7U2P72.6e-0881.08Transportin-3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5D3BGV95.9e-0881.08Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G0... [more]
A0A5A7V8515.9e-0885.71Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7TQM86.5e-0780.00Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G0... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028517.1MELO3C028517.1mRNA