MELO3C028511 (gene) Melon (DHL92) v4

Overview
NameMELO3C028511
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionMACPF domain-containing protein NSL1-like
Locationchr06: 15357782 .. 15359041 (-)
RNA-Seq ExpressionMELO3C028511
SyntenyMELO3C028511
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTTTTTTTTTCTTTTCTTTTTTTTTGGTCATGGACAACCAATTCTTCCTTGAGATGATATCCAAACAGCAATACTTTGTGGATAAGTTGAAATATTAACTATATTGCATCTCTCCTTCAGTATAACAGAAGGGAAGAAGATTCTGAATCAGTTCATTTCTAATATGTTCTCCACTAAAAACAGGATTATGCATATTATTGGTGAAAAGTCATATGAGTTTGTTGATTGCTTCTCCATGGATTTGGAAAAAGGGGGGAAAAAGTTTCTCACGAGTTCTTGATTAATGACTTGCTTTTCAAATATCATACAAAGGGGTTAACTATCTCGTGCCTGTCCATTTTTGTTACAGATTGTTACACGTAGCCAACGAAGTATATAGTAAAGACTTCTTTCATTATTTGAAATAATGAAAGAAGTTGTTTTCATCTCAGAAAAAGGAAAAACCCAAAGTAGCAAAGACGTCGATGTTTATTACTTTTGTGAAAAACACACAAATGCACAGCTTTGATGCAGGCCATGATTTCTGCTAGTTTCGGCCGGAGGATCTGGTGGTGGAAACGGAATGGAACAAGTTTTTGGATTAACCACCATTTCCTCCCTTTTTGTGAAGTTTCCAACAGTTTACGTGTGAGTAATTACCAATCAAATCACCTGCTTATTTTGTTCATCTGGATCAGCTACCCAAATATATATATATATATATAGTTGTGTTATATTTGGGTTTTTTTCCAGTTAACGCCGATCTTCCTCTTGCTCCTCGACACAGGAAACAAGCCTCTCCATCTCTCAAGTTTACTTTGATGGGGCCCAAGCTTTATGTAAATACTACTAAGGTAATCGTCTGACTAAAATATTTGGGTCAGTTAAAAACTTAAAATAGCAATGGCACTGCCGCAAATGTGATAACTGCGGTTGGTTTTTGCCTGACCCATCTATTACAGAAAGGTTCCCTTTGCTTGGATGCAAATTGTTGAATGTTTCACATGGTGTCACAATTTTGAAACTGCAGGTTGATTCAAACAATCGTCCAGTAACGGGAGTTCGCTTGTCTTCATGGGATCCTGCTGCCCTTGCAGAGTATGTTTCTTTTGTTTCTGTTTTTTGTCTTTTCTTTAGTAGAATTCTAGACATTTGGATGTTTGTCTGTCTGGACTGAAAGTCTCTTCTATTGAAATATCTTCATCACTGATATTTAACAAACTTCTCTGCGTTCATCTTCTCCACATTAACACACTAATTGTTAATGGTGTTGAATGA

mRNA sequence

TTTCTTTTTTTTTCTTTTCTTTTTTTTTGGTCATGGACAACCAATTCTTCCTTGAGATGATATCCAAACAGCAATACTTTGTGGATAAGTTGAAATATTAACTATATTGCATCTCTCCTTCAGTATAACAGAAGGGAAGAAGATTCTGAATCAGTTCATTTCTAATATGTTCTCCACTAAAAACAGGATTATGCATATTATTGGTGAAAAGTCATATGAGTTTGTTGATTGCTTCTCCATGGATTTGGAAAAAGGGGGGAAAAAGTTTCTCACGAGTTCTTGATTAATGACTTGCTTTTCAAATATCATACAAAGGGGTTAACTATCTCGTGCCTGTCCATTTTTGTTACAGATTGTTACACGTAGCCAACGAAGTATATAGTAAAGACTTCTTTCATTATTTGAAATAATGAAAGAAGTTGTTTTCATCTCAGAAAAAGGAAAAACCCAAAGTAGCAAAGACGTCGATGTTTATTACTTTTGTGAAAAACACACAAATGCACAGCTTTGATGCAGGCCATGATTTCTGCTAGTTTCGGCCGGAGGATCTGGTGGTGGAAACGGAATGGAACAAGTTTTTGGATTAACCACCATTTCCTCCCTTTTTGTGAAGTTTCCAACAGTTTACGTGTGAGTAATTACCAATCAAATCACCTGCTTATTTTGTTCATCTGGATCAGCTACCCAAATATATATATATATATATAGTTGTGTTATATTTGGGTTTTTTTCCAGTTAACGCCGATCTTCCTCTTGCTCCTCGACACAGGAAACAAGCCTCTCCATCTCTCAAGTTTACTTTGATGGGGCCCAAGCTTTATGTAAATACTACTAAGCAATGGCACTGCCGCAAATGTGATAACTGCGGTTGGTTTTTGCCTGACCCATCTATTACAGAAAGGTTCCCTTTGCTTGGATGCAAATTGTTGAATGTTTCACATGGTGTCACAATTTTGAAACTGCAGGTTGATTCAAACAATCGTCCAGTAACGGGAGTTCGCTTGTCTTCATGGGATCCTGCTGCCCTTGCAGAGTATAATTCTAGACATTTGGATGTTTGTCTGTCTGGACTGAAAGTCTCTTCTATTGAAATATCTTCATCACTGATATTTAACAAACTTCTCTGCGTTCATCTTCTCCACATTAACACACTAATTGTTAATGGTGTTGAATGA

Coding sequence (CDS)

ATGGGGCCCAAGCTTTATGTAAATACTACTAAGCAATGGCACTGCCGCAAATGTGATAACTGCGGTTGGTTTTTGCCTGACCCATCTATTACAGAAAGGTTCCCTTTGCTTGGATGCAAATTGTTGAATGTTTCACATGGTGTCACAATTTTGAAACTGCAGGTTGATTCAAACAATCGTCCAGTAACGGGAGTTCGCTTGTCTTCATGGGATCCTGCTGCCCTTGCAGAGTATAATTCTAGACATTTGGATGTTTGTCTGTCTGGACTGAAAGTCTCTTCTATTGAAATATCTTCATCACTGATATTTAACAAACTTCTCTGCGTTCATCTTCTCCACATTAACACACTAATTGTTAATGGTGTTGAATGA

Protein sequence

MGPKLYVNTTKQWHCRKCDNCGWFLPDPSITERFPLLGCKLLNVSHGVTILKLQVDSNNRPVTGVRLSSWDPAALAEYNSRHLDVCLSGLKVSSIEISSSLIFNKLLCVHLLHINTLIVNGVE
Homology
[Close]
BLAST of MELO3C028511 vs. NCBI nr
Match: XP_008465615.2 (PREDICTED: MACPF domain-containing protein NSL1-like, partial [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-11
Identity = 45/78 (57.69%), Postives = 52/78 (66.67%), Query Frame = 0 

Query: 31  TERFPLLGCKLLNVSHGVTILKLQVDSNNRPVTGVRLSSWDPAALAEYNSRHLDVCLSGL 90
           TERFPLLGCKLLNVSHGVTILKLQVDSNNRPVTGVRL       L    S HL + L  L
Sbjct: 1   TERFPLLGCKLLNVSHGVTILKLQVDSNNRPVTGVRL------FLEGKKSDHLAIHLQHL 60

Query: 91  KV--SSIEISSSLIFNKL 107
                ++++S  L +  +
Sbjct: 61  STLPKTLQLSDDLSYRPI 72

[Close]
BLAST of MELO3C028511 vs. NCBI nr
Match: TYK28678.1 (MACPF domain-containing protein NSL1-like [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 6.6e-04
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 0 

Query: 41  LLNVSHGVTILKLQVDSNNRPVTGVRLSSWDPAALAE 78
           L+N   G   L   VDSNNRPVTGVRLSSWDPAALAE
Sbjct: 207 LMNGIRGNGFLSHAVDSNNRPVTGVRLSSWDPAALAE 243

[Close]
BLAST of MELO3C028511 vs. ExPASy TrEMBL
Match: A0A1S3CP99 (MACPF domain-containing protein NSL1-like OS=Cucumis melo OX=3656 GN=LOC103503256 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11
Identity = 45/78 (57.69%), Postives = 52/78 (66.67%), Query Frame = 0 

Query: 31  TERFPLLGCKLLNVSHGVTILKLQVDSNNRPVTGVRLSSWDPAALAEYNSRHLDVCLSGL 90
           TERFPLLGCKLLNVSHGVTILKLQVDSNNRPVTGVRL       L    S HL + L  L
Sbjct: 1   TERFPLLGCKLLNVSHGVTILKLQVDSNNRPVTGVRL------FLEGKKSDHLAIHLQHL 60

Query: 91  KV--SSIEISSSLIFNKL 107
                ++++S  L +  +
Sbjct: 61  STLPKTLQLSDDLSYRPI 72

[Close]
BLAST of MELO3C028511 vs. ExPASy TrEMBL
Match: A0A5D3DYZ9 (MACPF domain-containing protein NSL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold165G00490 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 0 

Query: 41  LLNVSHGVTILKLQVDSNNRPVTGVRLSSWDPAALAE 78
           L+N   G   L   VDSNNRPVTGVRLSSWDPAALAE
Sbjct: 207 LMNGIRGNGFLSHAVDSNNRPVTGVRLSSWDPAALAE 243

The following BLAST results are available for this feature:
BLAST of MELO3C028511 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008465615.22.5e-1157.69PREDICTED: MACPF domain-containing protein NSL1-like, partial [Cucumis melo][more]
TYK28678.16.6e-0472.97MACPF domain-containing protein NSL1-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C028511 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028511 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CP991.2e-1157.69MACPF domain-containing protein NSL1-like OS=Cucumis melo OX=3656 GN=LOC10350325... [more]
A0A5D3DYZ93.2e-0472.97MACPF domain-containing protein NSL1-like OS=Cucumis melo var. makuwa OX=1194695... [more]
BLAST of MELO3C028511 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028511.1MELO3C028511.1mRNA