MELO3C028496 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028496
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	40S ribosomal protein S13-like
Location	chr08: 17451444 .. 17451972 (-)
RNA-Seq Expression	MELO3C028496
Synteny	MELO3C028496

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCTGTGTAATAGTGGAGGTGATCTTCAAAAATCAGTATAATTGATCTTGTTTTCTAATTTTCTAATTTTCTAATTTTTTTATGGTTTAGGTGAGGATATAGTTTTCTAATTTTCTAGACCATATGCAACTGTTTTCTAATTTTCTAGACCATATGCAACTGTTTTCTAATCTTATCTTGTTTCCATCTCACCTTTCCGCTTGGATGATTTAGGTGAGGATATAGTTTGCATCGGTGTCATTCTTCGTGATTCTCACGGTACTGCTCAGGTTAAGAGTGTTACTGGCAATAAGATCTTGCGCATTCTTAAAGCTCATGGTATTGTACTTGTTCTTCTTGTTCATCAATTCGAAATTTTAATGTATTAGTTTTAGGTTTTAGCTATTACCAGGATAGATATGGAAGATTGAGTATATGTTAATGTATTAGTTTTAGGTTTTAGCTATTGTGGTAATTGAATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTTA

mRNA sequence

ATGCAGCTGTGTAATAGTGGAGGTGAGGATATAGTTTGCATCGGTGTCATTCTTCGTGATTCTCACGGTACTGCTCAGGTTAAGAGTGTTACTGGCAATAAGATCTTGCGCATTCTTAAAGCTCATGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTTA

Coding sequence (CDS)

ATGCAGCTGTGTAATAGTGGAGGTGAGGATATAGTTTGCATCGGTGTCATTCTTCGTGATTCTCACGGTACTGCTCAGGTTAAGAGTGTTACTGGCAATAAGATCTTGCGCATTCTTAAAGCTCATGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTT

Protein sequence

MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHF

Homology

[Close]

BLAST of MELO3C028496 vs. NCBI nr
Match: KAA0049888.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH
Sbjct: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 54

[Close]

BLAST of MELO3C028496 vs. NCBI nr
Match: XP_008460618.1 (PREDICTED: 40S ribosomal protein S13-like [Cucumis melo] >KAA0054229.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH
Sbjct: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 54

[Close]

BLAST of MELO3C028496 vs. NCBI nr
Match: TYK07625.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK14810.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK15131.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK22659.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 4.1e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          MQLCNSGGEDIVCIGVILRDSHGTA+VKSVTGNKILRILKAHGLAPEIPEDLYH
Sbjct: 1  MQLCNSGGEDIVCIGVILRDSHGTAEVKSVTGNKILRILKAHGLAPEIPEDLYH 54

[Close]

BLAST of MELO3C028496 vs. NCBI nr
Match: KAA0063044.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 4.1e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          MQLCN+GGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH
Sbjct: 1  MQLCNNGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 54

[Close]

BLAST of MELO3C028496 vs. NCBI nr
Match: KAA0046917.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          MQLCNSGGEDIVCIGVILRDSHGTA+VKSVT NKILRILKAHGLAPEIPEDLYH
Sbjct: 1  MQLCNSGGEDIVCIGVILRDSHGTAEVKSVTSNKILRILKAHGLAPEIPEDLYH 54

[Close]

BLAST of MELO3C028496 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-15
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 14 IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          IGVILRDSHG AQVKSVTG+KILRILKAHGLAPEIPEDLYH
Sbjct: 50 IGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYH 90

[Close]

BLAST of MELO3C028496 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.6e-15
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 14 IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          IGVILRDSHG  QVKSVTG+KILRILKAHGLAPEIPEDLYH
Sbjct: 50 IGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYH 90

[Close]

BLAST of MELO3C028496 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.6e-15
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 14 IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          IGVILRDSHG  QVKSVTG+KILRILKAHGLAPEIPEDLYH
Sbjct: 50 IGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYH 90

[Close]

BLAST of MELO3C028496 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.6e-15
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 14 IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          IGVILRDSHG AQV SVTG+KILRILKAHGLAPEIPEDLYH
Sbjct: 50 IGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYH 90

[Close]

BLAST of MELO3C028496 vs. ExPASy Swiss-Prot
Match: P62299 (40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 14 IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          IGVILRDSHG AQV+ VTGNKI+RILKA G+APEIPEDLYH
Sbjct: 50 IGVILRDSHGVAQVRRVTGNKIVRILKAKGMAPEIPEDLYH 90

[Close]

BLAST of MELO3C028496 vs. ExPASy TrEMBL
Match: A0A5A7U3Q6 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00380 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.9e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH
Sbjct: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 54

[Close]

BLAST of MELO3C028496 vs. ExPASy TrEMBL
Match: A0A5A7UL87 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001740 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.9e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH
Sbjct: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 54

[Close]

BLAST of MELO3C028496 vs. ExPASy TrEMBL
Match: A0A1S3CCE6 (40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103499396 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.9e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH
Sbjct: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 54

[Close]

BLAST of MELO3C028496 vs. ExPASy TrEMBL
Match: A0A5D3CTP1 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00240 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          MQLCNSGGEDIVCIGVILRDSHGTA+VKSVTGNKILRILKAHGLAPEIPEDLYH
Sbjct: 1  MQLCNSGGEDIVCIGVILRDSHGTAEVKSVTGNKILRILKAHGLAPEIPEDLYH 54

[Close]

BLAST of MELO3C028496 vs. ExPASy TrEMBL
Match: A0A5A7V744 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001570 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MQLCNSGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          MQLCN+GGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH
Sbjct: 1  MQLCNNGGEDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 54

[Close]

BLAST of MELO3C028496 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 80.5 bits (197), Expect = 4.7e-16
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 14 IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          IGVILRDSHG  QVKSVTG+KILRILKAHGLAPEIPEDLYH
Sbjct: 50 IGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYH 90

[Close]

BLAST of MELO3C028496 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 80.5 bits (197), Expect = 4.7e-16
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 14 IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH 55
          IGVILRDSHG  QVKSVTG+KILRILKAHGLAPEIPEDLYH
Sbjct: 50 IGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYH 90

The following BLAST results are available for this feature:

BLAST of MELO3C028496 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049888.1	1.8e-22	100.00	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]
XP_008460618.1	1.8e-22	100.00	PREDICTED: 40S ribosomal protein S13-like [Cucumis melo] >KAA0054229.1 40S ribos...	[more]
TYK07625.1	4.1e-22	98.15	40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK14810.1 40S riboso...	[more]
KAA0063044.1	4.1e-22	98.15	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]
KAA0046917.1	2.0e-21	96.30	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028496 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46298	1.7e-15	95.12	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P59223	6.6e-15	92.68	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
P59224	6.6e-15	92.68	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P62302	6.6e-15	92.68	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P62299	1.2e-13	85.37	40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2	[more]

BLAST of MELO3C028496 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3Q6	8.9e-23	100.00	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7UL87	8.9e-23	100.00	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3CCE6	8.9e-23	100.00	40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103499396 PE=3 SV=1	[more]
A0A5D3CTP1	2.0e-22	98.15	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7V744	2.0e-22	98.15	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of MELO3C028496 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60770.1	4.7e-16	92.68	Ribosomal protein S13/S15	[more]
AT4G00100.1	4.7e-16	92.68	ribosomal protein S13A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.860.130		coord: 8..47 e-value: 1.1E-18 score: 68.7
None	No IPR available	PANTHER	PTHR11885:SF25	40S RIBOSOMAL PROTEIN S13-1-RELATED	coord: 13..55
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 13..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028496.1	MELO3C028496.1	mRNA