MELO3C028484 (gene) Melon (DHL92) v4

Overview
NameMELO3C028484
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionV-type proton ATPase subunit a
Locationchr07: 14101256 .. 14102363 (-)
RNA-Seq ExpressionMELO3C028484
SyntenyMELO3C028484
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAGCAAGTGTAGTGCGGTATATCCGTGCTTTTGGTCTCATTTCTTGTTTCCTATTTTCGGTTAATATTTAATTGACAGCAGTTATGTGCAGTTTTTGTAAACAAAATATCTTATGCTTGGTTTGATGGTGTTTGTTTGCCTGCTACTTTTACCAAGCAGATTAAAAGATGTGGGGAAATGGCTCGGAAGCTACGATTTTTCAGGGAGCAAATGGCAAGGGCTGGTTTATCACCATCATCCCATTCTTTAGGGACTCCTGATTTTGATCTGGATAATTTGGAGGTAGTTGGATTCTTTTTCTTCTTTCTTTATTTTTCTATCTCTCTCTCTCTCTCTCTAACGATTTAAATCCAGTAGCCTTTCCTCGCCTTTGGCAGGTTAAACTTGGAGAATTTGAAGTAGAGCTGTTAGAGATAAAGGACAACAACGAGAAGTTACAACGCAATTATAGTGAGCTATTGGAATACAAGCTGGTGCTTGAGAAGGTGTGGAATGTTTCTATTGATAAAAAGTTACTAAAATTCTGTCAGTCTTTACTCTTTAGTAATGTTGCTTACTTCTACATTGAAGTCGTCTTATAATCTGTGATCAATAAAGCGGCTTGGATTTTGTCAATTTGTTCGCAATTACTTGAACTTAGTAATTTGCAGTCGGCAGAAGATGGCTTATAACTATTTTATGCTTTCAGGTTGGTGAGTTTTTTCATCTAGCTCAAAGCATAGCTGCAGCTCATCAAAGAGAACTGGAAGTGCAGCAAAACGGGGAAGGATATATTGACACTCCCTTATTATTGGAACAAGTATGTTTTTGTTGTCTTAGTATCGTGTGAGCATTTTTTGTGTTCTTTTGAGTAGTAGCTGGGACTTTGTTGTGTCTTGTAGGAAATGACAACCGATCCAACGAAACAAGTTAAACTAGGATATATCAGTGGTCTAGTTCCGAGGGAAAAGTCAATGGCTTTCAAAGCGTGGTGGCCCTGTTTCATTCCTACAGATTCACCCTTCTCCAGCAAAGTCTGGTACTCCTCCAGCAAAGCCTGATAGGCATGATGTACTCAGAAGATCACACCCTTTATTGCTGATTGTTGCAGGAGAAGAAAGCAAGGAT

mRNA sequence

GTAGCAAGTGTAGTGCGGTATATCCGTGCTTTTGGTCTCATTTCTTGTTTCCTATTTTCGGTTAATATTTAATTGACAGCAGTTATGTGCAGTTTTTGTAAACAAAATATCTTATGCTTGGTTTGATGGTGTTTGTTTGCCTGCTACTTTTACCAAGCAGATTAAAAGATGTGGGGAAATGGCTCGGAAGCTACGATTTTTCAGGGAGCAAATGGCAAGGGCTGGTTTATCACCATCATCCCATTCTTTAGGGACTCCTGATTTTGATCTGGATAATTTGGAGTTCCGAGGGAAAAGTCAATGGCTTTCAAAGCGTGGTGGCCCTGTTTCATTCCTACAGATTCACCCTTCTCCAGCAAAGTCTGGTACTCCTCCAGCAAAGCCTGATAGGCATGATGTACTCAGAAGATCACACCCTTTATTGCTGATTGTTGCAGGAGAAGAAAGCAAGGAT

Coding sequence (CDS)

ATGGCTCGGAAGCTACGATTTTTCAGGGAGCAAATGGCAAGGGCTGGTTTATCACCATCATCCCATTCTTTAGGGACTCCTGATTTTGATCTGGATAATTTGGAGTTCCGAGGGAAAAGTCAATGGCTTTCAAAGCGTGGTGGCCCTGTTTCATTCCTACAGATTCACCCTTCTCCAGCAAAGTCTGGTACTCCTCCAGCAAAGCCTGATAGGCATGATGTACTCAGAAGATCACACCCTTTATTGCTGATTGTTGCAGGAGAAGAAAGCAAGGAT

Protein sequence

MARKLRFFREQMARAGLSPSSHSLGTPDFDLDNLEFRGKSQWLSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD
Homology
[Close]
BLAST of MELO3C028484 vs. NCBI nr
Match: KAA0057555.1 (autophagy-related protein 18g isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-19
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 43  LSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 93
           +SKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD
Sbjct: 128 VSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 177

[Close]
BLAST of MELO3C028484 vs. NCBI nr
Match: TYK18276.1 (autophagy-related protein 18g isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-19
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 43  LSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 93
           +SKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD
Sbjct: 127 VSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 176

[Close]
BLAST of MELO3C028484 vs. NCBI nr
Match: XP_038900258.1 (autophagy-related protein 18g-like isoform X2 [Benincasa hispida] >XP_038900259.1 autophagy-related protein 18g-like isoform X2 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 4.3e-16
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 43  LSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 93
           +SKRGGPVSFLQIHPSPAK  TPPAK D HDVLRRSHPLLLIVAGEESKD
Sbjct: 54  VSKRGGPVSFLQIHPSPAKPDTPPAKTDGHDVLRRSHPLLLIVAGEESKD 103

[Close]
BLAST of MELO3C028484 vs. NCBI nr
Match: XP_038900257.1 (autophagy-related protein 18g-like isoform X1 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 4.3e-16
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 43  LSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 93
           +SKRGGPVSFLQIHPSPAK  TPPAK D HDVLRRSHPLLLIVAGEESKD
Sbjct: 102 VSKRGGPVSFLQIHPSPAKPDTPPAKTDGHDVLRRSHPLLLIVAGEESKD 151

[Close]
BLAST of MELO3C028484 vs. NCBI nr
Match: XP_038900260.1 (autophagy-related protein 18g-like isoform X3 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 4.3e-16
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 43  LSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 93
           +SKRGGPVSFLQIHPSPAK  TPPAK D HDVLRRSHPLLLIVAGEESKD
Sbjct: 102 VSKRGGPVSFLQIHPSPAKPDTPPAKTDGHDVLRRSHPLLLIVAGEESKD 151

[Close]
BLAST of MELO3C028484 vs. ExPASy Swiss-Prot
Match: Q8GUL1 (Autophagy-related protein 18g OS=Arabidopsis thaliana OX=3702 GN=ATG18G PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-07
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 40  SQWLSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEES 91
           ++ +SKRGGPVSFLQ+ P PA+SG        H+    SHPLLL+VAG+E+
Sbjct: 98  NELVSKRGGPVSFLQMQPLPARSGD-------HEGFWNSHPLLLVVAGDET 141

[Close]
BLAST of MELO3C028484 vs. ExPASy TrEMBL
Match: A0A5A7UVG7 (Autophagy-related protein 18g isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00270 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 43  LSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 93
           +SKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD
Sbjct: 128 VSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 177

[Close]
BLAST of MELO3C028484 vs. ExPASy TrEMBL
Match: A0A5D3D409 (Autophagy-related protein 18g isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002190 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 43  LSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 93
           +SKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD
Sbjct: 127 VSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 176

[Close]
BLAST of MELO3C028484 vs. ExPASy TrEMBL
Match: A0A0A0K530 (BCAS3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G391270 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 43  LSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 93
           +SKRGGPVSFLQI PSPAK GTPPAK DRH++LRRSHPLLLIVAGEESKD
Sbjct: 102 VSKRGGPVSFLQILPSPAKPGTPPAKSDRHELLRRSHPLLLIVAGEESKD 151

[Close]
BLAST of MELO3C028484 vs. ExPASy TrEMBL
Match: A0A6J1GS94 (autophagy-related protein 18g isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456528 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 43  LSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 93
           +SKRGGPVSFLQ+HPSPAK  T P KPD HD+LR SHPLLLIVAGEESKD
Sbjct: 102 VSKRGGPVSFLQMHPSPAKPDT-PEKPDSHDLLRGSHPLLLIVAGEESKD 150

[Close]
BLAST of MELO3C028484 vs. ExPASy TrEMBL
Match: A0A6J1GQE2 (autophagy-related protein 18g isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111456528 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 43  LSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEESKD 93
           +SKRGGPVSFLQ+HPSPAK  T P KPD HD+LR SHPLLLIVAGEESKD
Sbjct: 102 VSKRGGPVSFLQMHPSPAKPDT-PEKPDSHDLLRGSHPLLLIVAGEESKD 150

[Close]
BLAST of MELO3C028484 vs. TAIR 10
Match: AT1G03380.1 (homolog of yeast autophagy 18 (ATG18) G )

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-08
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 40  SQWLSKRGGPVSFLQIHPSPAKSGTPPAKPDRHDVLRRSHPLLLIVAGEES 91
           ++ +SKRGGPVSFLQ+ P PA+SG        H+    SHPLLL+VAG+E+
Sbjct: 98  NELVSKRGGPVSFLQMQPLPARSGD-------HEGFWNSHPLLLVVAGDET 141

[Close]
BLAST of MELO3C028484 vs. TAIR 10
Match: AT2G21410.1 (vacuolar proton ATPase A2 )

HSP 1 Score: 41.6 bits (96), Expect = 4.0e-04
Identity = 18/37 (48.65%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 1   MARKLRFFREQMARAGLSPSSHSLGTPDFDLDNLEFR 38
           MARK+RFF+EQM++AG++P        D DLD++E +
Sbjct: 74  MARKIRFFKEQMSKAGVTPKETLDRENDIDLDDVEVK 110

The following BLAST results are available for this feature:
BLAST of MELO3C028484 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0057555.13.2e-1998.00autophagy-related protein 18g isoform X1 [Cucumis melo var. makuwa][more]
TYK18276.13.2e-1998.00autophagy-related protein 18g isoform X2 [Cucumis melo var. makuwa][more]
XP_038900258.14.3e-1690.00autophagy-related protein 18g-like isoform X2 [Benincasa hispida] >XP_038900259.... [more]
XP_038900257.14.3e-1690.00autophagy-related protein 18g-like isoform X1 [Benincasa hispida][more]
XP_038900260.14.3e-1690.00autophagy-related protein 18g-like isoform X3 [Benincasa hispida][more]
BLAST of MELO3C028484 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GUL12.9e-0752.94Autophagy-related protein 18g OS=Arabidopsis thaliana OX=3702 GN=ATG18G PE=2 SV=... [more]
BLAST of MELO3C028484 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UVG71.5e-1998.00Autophagy-related protein 18g isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3D4091.5e-1998.00Autophagy-related protein 18g isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A0A0K5306.1e-1688.00BCAS3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G391270 PE=4 ... [more]
A0A6J1GS942.8e-1382.00autophagy-related protein 18g isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1GQE22.8e-1382.00autophagy-related protein 18g isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of MELO3C028484 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03380.12.1e-0852.94homolog of yeast autophagy 18 (ATG18) G [more]
AT2G21410.14.0e-0448.65vacuolar proton ATPase A2 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028484.1MELO3C028484.1mRNA