MELO3C028481 (gene) Melon (DHL92) v4

Overview
NameMELO3C028481
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr09: 14650679 .. 14651128 (-)
RNA-Seq ExpressionMELO3C028481
SyntenyMELO3C028481
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTTTCTGCCCGCAGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCAGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGAAAGTCAGCGAGACTTCGAGTTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCAGCACGCAAACACATTTTATCATAAAATTCCCATTAAACTACCCACCTAACCCT

mRNA sequence

TTTTTTTTTCTGCCCGCAGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCAGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGAAAGTCAGCGAGACTTCGAGTTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCAGCACGCAAACACATTTTATCATAAAATTCCCATTAAACTACCCACCTAACCCT

Coding sequence (CDS)

ATGTATTTGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCAGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGAAAGTCAGCGAGACTTCGAGTTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCAGCACGCAAACACATTTTATCATAAAATTCCCATTAAACTACCCACCTAA

Protein sequence

MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHANTFYHKIPIKLPT
Homology
[Close]
BLAST of MELO3C028481 vs. NCBI nr
Match: KAA0062452.1 (hypothetical protein E6C27_scaffold130G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 4.6e-50
Identity = 102/108 (94.44%), Postives = 103/108 (95.37%), Query Frame = 0 

Query: 1   MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDL 60
           MY VAIGRPVG LRHS TWGLTS VADMTDLIWGMETRTSRPCT RELTSRRTMYVHPDL
Sbjct: 1   MYSVAIGRPVGLLRHSWTWGLTSLVADMTDLIWGMETRTSRPCTTRELTSRRTMYVHPDL 60

Query: 61  LALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA 109
           LALQRVGPDQVDRRGRG+VSETSSLKRYIWRSTKQTSNSGRLRSGQHA
Sbjct: 61  LALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHA 108

[Close]
BLAST of MELO3C028481 vs. NCBI nr
Match: TYK27431.1 (hypothetical protein E5676_scaffold325G001260 [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 4.6e-50
Identity = 102/108 (94.44%), Postives = 103/108 (95.37%), Query Frame = 0 

Query: 1   MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDL 60
           MY VAIGRPVG LRHS TWGLTS VADMTDLIWGMETRTSRPCT RELTSRRTMYVHPDL
Sbjct: 1   MYSVAIGRPVGLLRHSWTWGLTSLVADMTDLIWGMETRTSRPCTTRELTSRRTMYVHPDL 60

Query: 61  LALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA 109
           LALQRVGPDQVDRRGRG+VSETSSLKRYIWRSTKQTSNSGRLRSGQHA
Sbjct: 61  LALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHA 108

[Close]
BLAST of MELO3C028481 vs. NCBI nr
Match: KAA0054568.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 5.1e-41
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 19  WGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGK 78
           WGLTS VADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGP+QVDRR RGK
Sbjct: 147 WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPNQVDRRRRGK 206

Query: 79  VSETSSLKRYIWRSTKQTSNSGRLRSGQHA 109
           VSETSSLKRYIWRSTKQTSNSGRLRSGQHA
Sbjct: 207 VSETSSLKRYIWRSTKQTSNSGRLRSGQHA 236

[Close]
BLAST of MELO3C028481 vs. NCBI nr
Match: KAA0056563.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-39
Identity = 88/105 (83.81%), Postives = 92/105 (87.62%), Query Frame = 0 

Query: 7   GRPVGSLRHSRTW---GLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLAL 66
           GR   + R + T+   G    VADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLAL
Sbjct: 110 GRDRATGRFAETFADVGSNEPVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLAL 169

Query: 67  QRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA 109
           QRVGPDQVDRRGRG+VSETSSLKRYIWRSTKQTSNSGRLRSGQHA
Sbjct: 170 QRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHA 214

[Close]
BLAST of MELO3C028481 vs. NCBI nr
Match: TYK08719.1 (hypothetical protein E5676_scaffold76G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 9.3e-35
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0 

Query: 28  MTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKR 87
           MTDLIWGMETRTS PCTARELTSRRTMYVHPDLLALQRVG DQVDRRGRG+VSETSSLKR
Sbjct: 1   MTDLIWGMETRTSSPCTARELTSRRTMYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKR 60

Query: 88  YIWRSTKQTSNSGRLRSGQHA 109
           YIW STKQTSNSGRLRSGQHA
Sbjct: 61  YIWGSTKQTSNSGRLRSGQHA 81

[Close]
BLAST of MELO3C028481 vs. ExPASy TrEMBL
Match: A0A5A7V2L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00330 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.2e-50
Identity = 102/108 (94.44%), Postives = 103/108 (95.37%), Query Frame = 0 

Query: 1   MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDL 60
           MY VAIGRPVG LRHS TWGLTS VADMTDLIWGMETRTSRPCT RELTSRRTMYVHPDL
Sbjct: 1   MYSVAIGRPVGLLRHSWTWGLTSLVADMTDLIWGMETRTSRPCTTRELTSRRTMYVHPDL 60

Query: 61  LALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA 109
           LALQRVGPDQVDRRGRG+VSETSSLKRYIWRSTKQTSNSGRLRSGQHA
Sbjct: 61  LALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHA 108

[Close]
BLAST of MELO3C028481 vs. ExPASy TrEMBL
Match: A0A5D3DUQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001260 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.2e-50
Identity = 102/108 (94.44%), Postives = 103/108 (95.37%), Query Frame = 0 

Query: 1   MYLVAIGRPVGSLRHSRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDL 60
           MY VAIGRPVG LRHS TWGLTS VADMTDLIWGMETRTSRPCT RELTSRRTMYVHPDL
Sbjct: 1   MYSVAIGRPVGLLRHSWTWGLTSLVADMTDLIWGMETRTSRPCTTRELTSRRTMYVHPDL 60

Query: 61  LALQRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA 109
           LALQRVGPDQVDRRGRG+VSETSSLKRYIWRSTKQTSNSGRLRSGQHA
Sbjct: 61  LALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHA 108

[Close]
BLAST of MELO3C028481 vs. ExPASy TrEMBL
Match: A0A5A7UHW5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003600 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.5e-41
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 19  WGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGK 78
           WGLTS VADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGP+QVDRR RGK
Sbjct: 147 WGLTSLVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPNQVDRRRRGK 206

Query: 79  VSETSSLKRYIWRSTKQTSNSGRLRSGQHA 109
           VSETSSLKRYIWRSTKQTSNSGRLRSGQHA
Sbjct: 207 VSETSSLKRYIWRSTKQTSNSGRLRSGQHA 236

[Close]
BLAST of MELO3C028481 vs. ExPASy TrEMBL
Match: A0A5A7UL03 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00680 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.9e-40
Identity = 88/105 (83.81%), Postives = 92/105 (87.62%), Query Frame = 0 

Query: 7   GRPVGSLRHSRTW---GLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLAL 66
           GR   + R + T+   G    VADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLAL
Sbjct: 110 GRDRATGRFAETFADVGSNEPVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLAL 169

Query: 67  QRVGPDQVDRRGRGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHA 109
           QRVGPDQVDRRGRG+VSETSSLKRYIWRSTKQTSNSGRLRSGQHA
Sbjct: 170 QRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHA 214

[Close]
BLAST of MELO3C028481 vs. ExPASy TrEMBL
Match: A0A5D3CED6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00220 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.5e-35
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0 

Query: 28  MTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPDQVDRRGRGKVSETSSLKR 87
           MTDLIWGMETRTS PCTARELTSRRTMYVHPDLLALQRVG DQVDRRGRG+VSETSSLKR
Sbjct: 1   MTDLIWGMETRTSSPCTARELTSRRTMYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKR 60

Query: 88  YIWRSTKQTSNSGRLRSGQHA 109
           YIW STKQTSNSGRLRSGQHA
Sbjct: 61  YIWGSTKQTSNSGRLRSGQHA 81

The following BLAST results are available for this feature:
BLAST of MELO3C028481 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062452.14.6e-5094.44hypothetical protein E6C27_scaffold130G00330 [Cucumis melo var. makuwa][more]
TYK27431.14.6e-5094.44hypothetical protein E5676_scaffold325G001260 [Cucumis melo var. makuwa][more]
KAA0054568.15.1e-4196.67retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0056563.11.6e-3983.81retrotransposon protein [Cucumis melo var. makuwa][more]
TYK08719.19.3e-3595.06hypothetical protein E5676_scaffold76G00220 [Cucumis melo var. makuwa][more]
BLAST of MELO3C028481 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028481 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V2L22.2e-5094.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DUQ62.2e-5094.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UHW52.5e-4196.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UL037.9e-4083.81Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CED64.5e-3595.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C028481 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028481.1MELO3C028481.1mRNA