MELO3C028480 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028480
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CACTA en-spm transposon protein
Location	chr05: 26268352 .. 26268762 (-)
RNA-Seq Expression	MELO3C028480
Synteny	MELO3C028480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCATTATGTCATATCGACGATCAAATTTTATAGAGACGAACGATATGTTCCTCCAGTTTGAGGATGATTTATATAAACATTGCGGGAGGGTCGTCATCTGTGGGCGACAATACGGGTGAGTCTAAGAATTTTCTTCATTTTTAACTTACAAATATTTCATGTAGGGGTTTATAACTTTATATGTTATTGTCTATTTATTGAGTAGGGTCTTCTTCTCAACAAACGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGCGCATTCCGATGACGATCGCCCCTGGAGCGGAGAAGCCTATTTCTCCACACGCCGTTCGCTTCAGCCAGATGATAGGCGTGTGCGTGCGAAAGACATTTTTCGTCCATTGTCTTAA

mRNA sequence

GTCATTATGTCATATCGACGATCAAATTTTATAGAGACGAACGATATGTTCCTCCAGTTTGAGGATGATTTATATAAACATTGCGGGAGGGTCGTCATCTGTGGGCGACAATACGGGGTCTTCTTCTCAACAAACGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGCGCATTCCGATGACGATCGCCCCTGGAGCGGAGAAGCCTATTTCTCCACACGCCGGCGTGTGCGTGCGAAAGACATTTTTCGTCCATTGTCTTAA

Coding sequence (CDS)

ATGATTTATATAAACATTGCGGGAGGGTCGTCATCTGTGGGCGACAATACGGGGTCTTCTTCTCAACAAACGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGCGCATTCCGATGACGATCGCCCCTGGAGCGGAGAAGCCTATTTCTCCACACGCCGGCGTGTGCGTGCGAAAGACATTTTTCGTCCATTGTCTT

Protein sequence

MIYINIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAGVCVRKTFFVHCL

Homology

[Close]

BLAST of MELO3C028480 vs. NCBI nr
Match: TYK18361.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 7.6e-30
Identity = 73/81 (90.12%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 5  NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 64
          NIAGGSSSVGDNT SSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH
Sbjct: 11 NIAGGSSSVGDNTRSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 70

Query: 65 A-------GVCVRKTFFVHCL 79
          A       GVCVRKTFFVHCL
Sbjct: 71 AVRFSQMIGVCVRKTFFVHCL 91

[Close]

BLAST of MELO3C028480 vs. NCBI nr
Match: KAA0063664.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 2.2e-29
Identity = 74/82 (90.24%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 5  NIAGGSSSVGDNT-GSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISP 64
          NIAGGSSSVGDNT GSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISP
Sbjct: 11 NIAGGSSSVGDNTVGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISP 70

Query: 65 HA-------GVCVRKTFFVHCL 79
          HA       GVCVRKTFFVHCL
Sbjct: 71 HAVRFSQMIGVCVRKTFFVHCL 92

[Close]

BLAST of MELO3C028480 vs. NCBI nr
Match: TYJ96549.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 72/81 (88.89%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 5   NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 64
           NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH
Sbjct: 220 NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 279

Query: 65  A-------GVCVRKTFFVHCL 79
           A       GVCVRKTF V CL
Sbjct: 280 ANRFSQAIGVCVRKTFPVRCL 300

[Close]

BLAST of MELO3C028480 vs. NCBI nr
Match: TYK14413.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 72/81 (88.89%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 5  NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 64
          NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH
Sbjct: 17 NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 76

Query: 65 A-------GVCVRKTFFVHCL 79
          A       GVCVRKTF V CL
Sbjct: 77 AVRFSQAIGVCVRKTFPVRCL 97

[Close]

BLAST of MELO3C028480 vs. NCBI nr
Match: TYK17077.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 72/81 (88.89%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 5  NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 64
          NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH
Sbjct: 17 NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 76

Query: 65 A-------GVCVRKTFFVHCL 79
          A       GVCVRKTF V CL
Sbjct: 77 AVRFSQAIGVCVRKTFPVRCL 97

[Close]

BLAST of MELO3C028480 vs. ExPASy TrEMBL
Match: A0A5D3D498 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00800 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.7e-30
Identity = 73/81 (90.12%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 5  NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 64
          NIAGGSSSVGDNT SSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH
Sbjct: 11 NIAGGSSSVGDNTRSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 70

Query: 65 A-------GVCVRKTFFVHCL 79
          A       GVCVRKTFFVHCL
Sbjct: 71 AVRFSQMIGVCVRKTFFVHCL 91

[Close]

BLAST of MELO3C028480 vs. ExPASy TrEMBL
Match: A0A5A7V8Y1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G001800 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 74/82 (90.24%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 5  NIAGGSSSVGDNT-GSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISP 64
          NIAGGSSSVGDNT GSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISP
Sbjct: 11 NIAGGSSSVGDNTVGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISP 70

Query: 65 HA-------GVCVRKTFFVHCL 79
          HA       GVCVRKTFFVHCL
Sbjct: 71 HAVRFSQMIGVCVRKTFFVHCL 92

[Close]

BLAST of MELO3C028480 vs. ExPASy TrEMBL
Match: A0A5D3CZD0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00260 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.3e-29
Identity = 72/81 (88.89%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 5  NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 64
          NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH
Sbjct: 17 NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 76

Query: 65 A-------GVCVRKTFFVHCL 79
          A       GVCVRKTF V CL
Sbjct: 77 AVRFSQAIGVCVRKTFPVRCL 97

[Close]

BLAST of MELO3C028480 vs. ExPASy TrEMBL
Match: A0A5D3CZJ1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00390 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.3e-29
Identity = 72/81 (88.89%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 5  NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 64
          NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH
Sbjct: 16 NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 75

Query: 65 A-------GVCVRKTFFVHCL 79
          A       GVCVRKTF V CL
Sbjct: 76 AVRFSQAIGVCVRKTFPVRCL 96

[Close]

BLAST of MELO3C028480 vs. ExPASy TrEMBL
Match: A0A5D3CLU4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00810 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.3e-29
Identity = 72/81 (88.89%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 5  NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 64
          NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH
Sbjct: 17 NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPH 76

Query: 65 A-------GVCVRKTFFVHCL 79
          A       GVCVRKTF V CL
Sbjct: 77 AVRFSQAIGVCVRKTFPVRCL 97

The following BLAST results are available for this feature:

BLAST of MELO3C028480 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18361.1	7.6e-30	90.12	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0063664.1	2.2e-29	90.24	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYJ96549.1	1.1e-28	88.89	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK14413.1	1.1e-28	88.89	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK17077.1	1.1e-28	88.89	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D498	3.7e-30	90.12	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V8Y1	1.1e-29	90.24	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3CZD0	5.3e-29	88.89	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CZJ1	5.3e-29	88.89	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CLU4	5.3e-29	88.89	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C028480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028480.1	MELO3C028480.1	mRNA