MELO3C028469 (gene) Melon (DHL92) v4

Overview
NameMELO3C028469
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDNA repair protein UVH3
Locationchr11: 7413246 .. 7414797 (+)
RNA-Seq ExpressionMELO3C028469
SyntenyMELO3C028469
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGCTTCATATGCTGCAGATTATGCTGGGAAAAGTTTGGGTGGGAGAACTCGAAGGCAGATGAATTGCTTTTGCCAGTCCTGAAAGAGTACAACAAACGTGAGGCTAGTTACTTTCACTTATAGCTATTATGTTTGAACAATTTCCATGGTTCTTTCTTATGTTTTTCATCGTTAACTTGAGTAGTGTTGCTGTCTATAACTGACACTGACCGTGGAGTTGGGGTCCAGTGTGTGTGGTGTGGAAGAAGTTGAACTTATTGCGCAGAGGTAGAGTTTCAGGGCTTGGAGAAGTGACTTTGAAAATTTGGGGTTTTTTGCTTTGGGGTTGTCGACGAAAAGAATGGTAAGTTTGAATTGGGAATTTTGCTTACTCTTTCATCTCTGTATGTTGCTTTGTGTAAACTTAATTCTTTTGAAAGACTAATTTTCAGTTTCATGGGGTTTGCGGATACTGATTTATCACCAACATTTTCTTTTTTCTCAAAATGTGAAGCTGTGAGCATCAAACATGTTTGTTAATTTTCAGATTCTTTTCATGGTAAGTTTGAATTGGGAATTTTGCTTCTCTTCCTCCATCCACTTACACAGATGCACCACCCACTTGATTCAGATGCCTTTTACATTCATGAATTTGATCTTGTTTCTTCCTTTTCCTTCCAGGGTTGTCTTGGTCCATGGACGAGAGATCGTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGGTAATCGTGCATGTTGAGATTAACCCTTTGATTTACCAGTTGTAGTCTACGTGTTCGACGAAATGTCTAGTTGATTTCAGACCTCAGTTCATCACGTGTGCTTCTGGGTCGAAACATTTTGCTTCCTTGACTTTCATAATTCCAAGGTTTTTCTTTCTAAAACTAAATTTTGTTTCATTGAAGTTTCTTCTTTTATAATTCTTGTAACGAGAGAGAAAATGAGTTTGAGATGTTTAGGATTTAGGAGCGTTTTGTTTCGTAGCGTTTTACTATGCTTTTGTGATTTTCTTGGAATATTGAGACAAACCAAACAATGAGAAATATAGAGATTGAAATAATAACGAATTTGAGAGGTGGGAAACTAGAATTTATATATGAGGTAAAAGGAATTTGATGTCCATTGGTAATCACTCTGGAACTTCACCAACAAAATAGCTTTTGGGGATGAAGTTCATTTGATAAGTTTAGATGAAATTGCATGACCATTTTGAAACTTCTGTGGTGATCACTAGTCTATAGAAACATTAATGTCCTGTATGTTGCTTTGTTTGGTTTACTTGGTGACTTTAATTTGTTTTGTTAATTTGGATGGAGTTAATTGTTGTAATGTTTATAAGATTTGACCTTAAACATAGTTTTGTAGCTATATTTATTAGTTCTTACTATAGCAAATAACTTTCTTATCTTAAAGTTTTATGAGCTTTTATTTTGACGATTGTTTATTTTTAAGTACTTTTCATAACTTAGTATAACCTTTTTGTTGTAGTTAAGGTGTTTGAAAAAATATCTGAGAGATCTTCACTAGATTTTCATAGTTACTAA

mRNA sequence

TTGCTTCATATGCTGCAGATTATGCTGGGAAAAGTTTGGGTGGGAGAACTCGAAGGCAGATGAATTGCTTTTGCCAGTCCTGAAAGAGTACAACAAACGTGAGGCTAGGTTGTCTTGGTCCATGGACGAGAGATCGTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAAGGTGTTTGAAAAAATATCTGAGAGATCTTCACTAGATTTTCATAGTTACTAA

Coding sequence (CDS)

TGCTTCATATGCTGCAGATTATGCTGGGAAAAGTTTGGGTGGGAGAACTCGAAGGCAGATGAATTGCTTTTGCCAGTCCTGAAAGAGTACAACAAACGTGAGGCTAGGTTGTCTTGGTCCATGGACGAGAGATCGTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAAGGTGTTTGAAAAAATATCTGAGAGATCTTCACTAGATTTTCATAGTTACTAA

Protein sequence

CFICCRLCWEKFGWENSKADELLLPVLKEYNKREARLSWSMDERSLKDAFSSFGEVTEVKVFEKISERSSLDFHSY
Homology
BLAST of MELO3C028469 vs. NCBI nr
Match: XP_022150081.1 (DNA repair protein UVH3 isoform X3 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 4.7e-08
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 2    FICCRLCWEKFGWENSKADELLLPVLKEYNKREARLS----WSMDERSLK 48
            F+  RLCWEKFGW+NSKADELLLPVLKEY+K E +L     ++ DER  K
Sbjct: 1161 FVLRRLCWEKFGWDNSKADELLLPVLKEYSKHETQLRLETFYTFDERFAK 1210

BLAST of MELO3C028469 vs. NCBI nr
Match: XP_022150080.1 (DNA repair protein UVH3 isoform X2 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 4.7e-08
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 2    FICCRLCWEKFGWENSKADELLLPVLKEYNKREARLS----WSMDERSLK 48
            F+  RLCWEKFGW+NSKADELLLPVLKEY+K E +L     ++ DER  K
Sbjct: 1184 FVLRRLCWEKFGWDNSKADELLLPVLKEYSKHETQLRLETFYTFDERFAK 1233

BLAST of MELO3C028469 vs. NCBI nr
Match: XP_022150078.1 (DNA repair protein UVH3 isoform X1 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 4.7e-08
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 2    FICCRLCWEKFGWENSKADELLLPVLKEYNKREARLS----WSMDERSLK 48
            F+  RLCWEKFGW+NSKADELLLPVLKEY+K E +L     ++ DER  K
Sbjct: 1186 FVLRRLCWEKFGWDNSKADELLLPVLKEYSKHETQLRLETFYTFDERFAK 1235

BLAST of MELO3C028469 vs. NCBI nr
Match: KAA0053691.1 (DNA repair protein UVH3 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 6.1e-08
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 2    FICCRLCWEKFGWENSKADELLLPVLKEYNKREARL 38
            F+  RLCWEKFGWENSKADELLLPVLKEY+K E +L
Sbjct: 1139 FVLRRLCWEKFGWENSKADELLLPVLKEYSKHETQL 1174

BLAST of MELO3C028469 vs. NCBI nr
Match: XP_038903932.1 (DNA repair protein UVH3 isoform X2 [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 6.1e-08
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 2    FICCRLCWEKFGWENSKADELLLPVLKEYNKREARL 38
            F+  RLCWEKFGWENSKADELLLPVLKEY+K E +L
Sbjct: 1142 FVLRRLCWEKFGWENSKADELLLPVLKEYSKHETQL 1177

BLAST of MELO3C028469 vs. ExPASy Swiss-Prot
Match: Q9ATY5 (DNA repair protein UVH3 OS=Arabidopsis thaliana OX=3702 GN=UVH3 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.3e-08
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 6    RLCWEKFGWENSKADELLLPVLKEYNKREARLS----WSMDERSLK 48
            +LCWEKF W   K DELLLPVLKEY KRE +L     +S +ER  K
Sbjct: 1149 KLCWEKFNWNGKKTDELLLPVLKEYEKRETQLRIEAFYSFNERFAK 1194

BLAST of MELO3C028469 vs. ExPASy TrEMBL
Match: A0A6J1D8H5 (DNA repair protein UVH3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018345 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 2    FICCRLCWEKFGWENSKADELLLPVLKEYNKREARLS----WSMDERSLK 48
            F+  RLCWEKFGW+NSKADELLLPVLKEY+K E +L     ++ DER  K
Sbjct: 1186 FVLRRLCWEKFGWDNSKADELLLPVLKEYSKHETQLRLETFYTFDERFAK 1235

BLAST of MELO3C028469 vs. ExPASy TrEMBL
Match: A0A6J1D7H7 (DNA repair protein UVH3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018345 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 2    FICCRLCWEKFGWENSKADELLLPVLKEYNKREARLS----WSMDERSLK 48
            F+  RLCWEKFGW+NSKADELLLPVLKEY+K E +L     ++ DER  K
Sbjct: 1184 FVLRRLCWEKFGWDNSKADELLLPVLKEYSKHETQLRLETFYTFDERFAK 1233

BLAST of MELO3C028469 vs. ExPASy TrEMBL
Match: A0A6J1DAD7 (DNA repair protein UVH3 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111018345 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 2    FICCRLCWEKFGWENSKADELLLPVLKEYNKREARLS----WSMDERSLK 48
            F+  RLCWEKFGW+NSKADELLLPVLKEY+K E +L     ++ DER  K
Sbjct: 1161 FVLRRLCWEKFGWDNSKADELLLPVLKEYSKHETQLRLETFYTFDERFAK 1210

BLAST of MELO3C028469 vs. ExPASy TrEMBL
Match: A0A5A7TXE5 (DNA repair protein UVH3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00420 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 33/54 (61.11%), Postives = 35/54 (64.81%), Query Frame = 0

Query: 6   RLCWEKFGWENSKADELLLPVLKEYNK-----------REARLSWSMDERSLKD 49
           RLCW+KFGWENSKADELLLPVLKEYNK            EAR  W   + S KD
Sbjct: 139 RLCWKKFGWENSKADELLLPVLKEYNKHERFEKEEEIREEARFQWIASDSSEKD 192

BLAST of MELO3C028469 vs. ExPASy TrEMBL
Match: A0A5D3CQ45 (DNA repair protein UVH3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1119G00080 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 2    FICCRLCWEKFGWENSKADELLLPVLKEYNKREARL 38
            F+  RLCWEKFGWENSKADELLLPVLKEY+K E +L
Sbjct: 1149 FVLRRLCWEKFGWENSKADELLLPVLKEYSKHETQL 1184

BLAST of MELO3C028469 vs. TAIR 10
Match: AT3G28030.1 (5'-3' exonuclease family protein )

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-09
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 6    RLCWEKFGWENSKADELLLPVLKEYNKREARLS----WSMDERSLK 48
            +LCWEKF W   K DELLLPVLKEY KRE +L     +S +ER  K
Sbjct: 1149 KLCWEKFNWNGKKTDELLLPVLKEYEKRETQLRIEAFYSFNERFAK 1194

BLAST of MELO3C028469 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 47.4 bits (111), Expect = 6.1e-06
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 37 LSWSMDERSLKDAFSSFGEVTEVKV-FEKISERS 70
          LSWS+DE+SLKDAFSSFGEV EV++ ++K S RS
Sbjct: 48 LSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRS 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150081.14.7e-0864.00DNA repair protein UVH3 isoform X3 [Momordica charantia][more]
XP_022150080.14.7e-0864.00DNA repair protein UVH3 isoform X2 [Momordica charantia][more]
XP_022150078.14.7e-0864.00DNA repair protein UVH3 isoform X1 [Momordica charantia][more]
KAA0053691.16.1e-0880.56DNA repair protein UVH3 [Cucumis melo var. makuwa][more]
XP_038903932.16.1e-0880.56DNA repair protein UVH3 isoform X2 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9ATY56.3e-0858.70DNA repair protein UVH3 OS=Arabidopsis thaliana OX=3702 GN=UVH3 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1D8H52.3e-0864.00DNA repair protein UVH3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC11101834... [more]
A0A6J1D7H72.3e-0864.00DNA repair protein UVH3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC11101834... [more]
A0A6J1DAD72.3e-0864.00DNA repair protein UVH3 isoform X3 OS=Momordica charantia OX=3673 GN=LOC11101834... [more]
A0A5A7TXE52.9e-0861.11DNA repair protein UVH3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A5D3CQ452.9e-0880.56DNA repair protein UVH3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT3G28030.14.5e-0958.705'-3' exonuclease family protein [more]
AT3G08000.16.1e-0670.59RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 37..70
e-value: 4.2E-5
score: 23.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 35..73
e-value: 5.8E-6
score: 28.2
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 37..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028469.1MELO3C028469.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding