MELO3C028457 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028457
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	7-hydroxymethyl chlorophyll a reductase, chloroplastic
Location	chr07: 13072098 .. 13072912 (-)
RNA-Seq Expression	MELO3C028457
Synteny	MELO3C028457

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATTAGTATTGAACAAGATGGTCTTCATTTCATGTTTTTCTAATGCCATTTTTGTGAACTTTTCATTGTTCTATCATAATGTAGTGATCCAGAGGATAGACCAAGACCAAGGCCAATTTTAGCAAGGTTTGTCTAAGTTTACATGTGTTTGGTAGCTTACAATGTGTTTGATGAAATGGCTTAGTGAAGCATTTGGATGATTTTTAATTGATTTTTGTTTGTTTGAATTAGGAAATCAAGGCCAAAGAGAGATTTCATGTTTATGTCTATTAGTATTGAACAAAATGGTTTTCATTTCATGTTTTTCCAATGCCATTTTTATGAACTTTTCATCGTTCTATCATATTGTAATGATCCAGAGGATAGACTGAGACCAAGGCCTATTTTAGCAAAGTTTGCTAAGTTTATTCACTAATCTTTGGTAGCTTTACTGATAATATTCTGGAAACAGTATTGACAAATAATCTCTCCTTCACTTCAATGTTGCAGGTTTAATTTGCTACTATAATTATTCTTGCATTTGTAATAGGACACAAAAAGAAGTCTTTGCAGACACAGGAGTAAAGCCAACGTTGACTCCTAACTTGAATACCCTAGCTCTAGTTGAGGTGCTTTTCTTTTTTCATTATATATTGCTTCTGTTTCCTTGTTCATTTCATGAAGAAAAAGCCCAAATTCTTTCTCATTGTGGTTAATGTGTAGTTGTGGTTGTGGTTGTGGTTAATATGTATTCCCTTAATAGAGTAAAGTAAAGCTAAGAATCGATTAGAATAAGGCTATTTATAATGTTTGTTGTTTCTTTGTATGTTT

mRNA sequence

ATGTCTATTAGTATTGAACAAGATGGTCTTCATTTCATTGATCCAGAGGATAGACCAAGACCAAGGCCAATTTTAGCAAGGACACAAAAAGAAGTCTTTGCAGACACAGGAGTAAAGCCAACGTTGACTCCTAACTTGAATACCCTAGCTCTAGTTGAGGTGCTTTTCTTTTTTCATTATATATTGCTTCTGTTTCCTTGTTCATTTCATGAAGAAAAAGCCCAAATTCTTTCTCATTGTGGTTAATGTGTAGTTGTGGTTGTGGTTGTGGTTAATATGTATTCCCTTAATAGAGTAAAGTAAAGCTAAGAATCGATTAGAATAAGGCTATTTATAATGTTTGTTGTTTCTTTGTATGTTT

Coding sequence (CDS)

ATGTCTATTAGTATTGAACAAGATGGTCTTCATTTCATTGATCCAGAGGATAGACCAAGACCAAGGCCAATTTTAGCAAGGACACAAAAAGAAGTCTTTGCAGACACAGGAGTAAAGCCAACGTTGACTCCTAACTTGAATACCCTAGCTCTAGTTGAGGTGCTTTTCTTTTTTCATTATATATTGCTTCTGTTTCCTTGTTCATTTCATGAAGAAAAAGCCCAAATTCTTTCTCATTGTGGTTAA

Protein sequence

MSISIEQDGLHFIDPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVEVLFFFHYILLLFPCSFHEEKAQILSHCG

Homology

[Close]

BLAST of MELO3C028457 vs. NCBI nr
Match: GAY66842.1 (hypothetical protein CUMW_252020 [Citrus unshiu])

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 8   DGLHFIDPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVE 54
           +G+ F DP+DR  PRP+LART +EV A  GVKPTL+PNLNTLALVE
Sbjct: 101 EGVSFFDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVE 146

[Close]

BLAST of MELO3C028457 vs. NCBI nr
Match: KAB5537727.1 (hypothetical protein DKX38_015260 [Salix brachista])

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-08
Identity = 39/59 (66.10%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 14   DPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVEVL-------FFFHYILLLF 66
            DPEDR  PRP+LART  EV A  GVKPTL+PNLNTLALVEVL       FF H I +LF
Sbjct: 1168 DPEDRFSPRPVLARTPDEVLAAKGVKPTLSPNLNTLALVEVLSNYSYKQFFRHLISVLF 1226

[Close]

BLAST of MELO3C028457 vs. NCBI nr
Match: PKU66603.1 (7-hydroxymethyl chlorophyll a reductase, chloroplastic [Dendrobium catenatum])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 14  DPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVEVL 56
           DPEDR  PRPILART  EVFA  GVKPTL+PNL+TLA++EVL
Sbjct: 149 DPEDRLSPRPILARTPDEVFAAKGVKPTLSPNLDTLAVIEVL 190

[Close]

BLAST of MELO3C028457 vs. NCBI nr
Match: KAG0486765.1 (hypothetical protein HPP92_008860 [Vanilla planifolia])

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-07
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 14  DPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVE 54
           DPEDR  PRPILART +EVFA  GVKPTL+PNLNTLA++E
Sbjct: 145 DPEDRLSPRPILARTPEEVFAAKGVKPTLSPNLNTLAVIE 184

[Close]

BLAST of MELO3C028457 vs. NCBI nr
Match: KAG0484930.1 (hypothetical protein HPP92_009009 [Vanilla planifolia])

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-07
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 14  DPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVE 54
           DPEDR  PRPILART +EVFA  GVKPTL+PNLNTLA++E
Sbjct: 148 DPEDRLSPRPILARTPEEVFAAKGVKPTLSPNLNTLAVIE 187

[Close]

BLAST of MELO3C028457 vs. ExPASy Swiss-Prot
Match: Q8GS60 (7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HCAR PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-09
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 14  DPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVE 54
           DPEDR  PRP+LART +EV A  GVKPTL+PNLNTL L+E
Sbjct: 158 DPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIE 197

[Close]

BLAST of MELO3C028457 vs. ExPASy Swiss-Prot
Match: Q7XTG7 (7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=HCAR PE=3 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-08
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 14  DPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVE 54
           DP+DR  P P+LART  EV A  GVKPTL+PNLNTLALVE
Sbjct: 169 DPDDRLAPMPVLARTPDEVIAAKGVKPTLSPNLNTLALVE 208

[Close]

BLAST of MELO3C028457 vs. ExPASy TrEMBL
Match: A0A2H5QQE0 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_252020 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.3e-09
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 8   DGLHFIDPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVE 54
           +G+ F DP+DR  PRP+LART +EV A  GVKPTL+PNLNTLALVE
Sbjct: 101 EGVSFFDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVE 146

[Close]

BLAST of MELO3C028457 vs. ExPASy TrEMBL
Match: A0A5N5L4Q0 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_015260 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-08
Identity = 39/59 (66.10%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 14   DPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVEVL-------FFFHYILLLF 66
            DPEDR  PRP+LART  EV A  GVKPTL+PNLNTLALVEVL       FF H I +LF
Sbjct: 1168 DPEDRFSPRPVLARTPDEVLAAKGVKPTLSPNLNTLALVEVLSNYSYKQFFRHLISVLF 1226

[Close]

BLAST of MELO3C028457 vs. ExPASy TrEMBL
Match: A0A0V0ISM0 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 14  DPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVEVLF 57
           DPEDR  PRP+LART +EV A  GVKPTL+PNLNTLALVE LF
Sbjct: 155 DPEDRFAPRPVLARTPEEVIAAKGVKPTLSPNLNTLALVESLF 197

[Close]

BLAST of MELO3C028457 vs. ExPASy TrEMBL
Match: A0A2I0VT69 (7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Dendrobium catenatum OX=906689 GN=HCAR PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.0e-08
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 14  DPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVEVL 56
           DPEDR  PRPILART  EVFA  GVKPTL+PNL+TLA++EVL
Sbjct: 149 DPEDRLSPRPILARTPDEVFAAKGVKPTLSPNLDTLAVIEVL 190

[Close]

BLAST of MELO3C028457 vs. ExPASy TrEMBL
Match: A0A0D6R0M3 (Uncharacterized protein OS=Araucaria cunninghamii OX=56994 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.1e-08
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 14  DPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVEV 55
           DPEDR  P+P++ART +EVFA  GVKPTL+PNLNTLALVEV
Sbjct: 148 DPEDRFTPKPVVARTPEEVFAAKGVKPTLSPNLNTLALVEV 188

[Close]

BLAST of MELO3C028457 vs. TAIR 10
Match: AT1G04620.1 (coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family )

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-10
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 14  DPEDRPRPRPILARTQKEVFADTGVKPTLTPNLNTLALVE 54
           DPEDR  PRP+LART +EV A  GVKPTL+PNLNTL L+E
Sbjct: 158 DPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIE 197

The following BLAST results are available for this feature:

BLAST of MELO3C028457 vs. NCBI nr


Match Name	E-value	Identity	Description
GAY66842.1	1.3e-08	69.57	hypothetical protein CUMW_252020 [Citrus unshiu]	[more]
KAB5537727.1	3.8e-08	66.10	hypothetical protein DKX38_015260 [Salix brachista]	[more]
PKU66603.1	1.4e-07	76.19	7-hydroxymethyl chlorophyll a reductase, chloroplastic [Dendrobium catenatum]	[more]
KAG0486765.1	1.9e-07	77.50	hypothetical protein HPP92_008860 [Vanilla planifolia]	[more]
KAG0484930.1	1.9e-07	77.50	hypothetical protein HPP92_009009 [Vanilla planifolia]	[more]

BLAST of MELO3C028457 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GS60	2.7e-09	72.50	7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q7XTG7	1.0e-08	72.50	7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Oryza sativa subsp. ja...	[more]

BLAST of MELO3C028457 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H5QQE0	6.3e-09	69.57	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_252020 PE=4 SV=1	[more]
A0A5N5L4Q0	1.8e-08	66.10	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_015260 PE=4 SV=1	[more]
A0A0V0ISM0	4.1e-08	76.74	Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
A0A2I0VT69	7.0e-08	76.19	7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Dendrobium catenatum O...	[more]
A0A0D6R0M3	9.1e-08	75.61	Uncharacterized protein OS=Araucaria cunninghamii OX=56994 PE=4 SV=1	[more]

BLAST of MELO3C028457 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04620.1	1.9e-10	72.50	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007516	Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal	PFAM	PF04422	FrhB_FdhB_N	coord: 14..49 e-value: 3.2E-5 score: 23.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028457.1	MELO3C028457.1	mRNA