MELO3C028414 (gene) Melon (DHL92) v4

Overview
NameMELO3C028414
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPlastid movement impaired 2
Locationchr09: 302458 .. 302578 (+)
RNA-Seq ExpressionMELO3C028414
SyntenyMELO3C028414
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCGTTAAGGCCAAGCCATTGGAGCCGCAACAGGATTTAAACAAGAAGAAGATTTATTTTCTTTTACAGTTGCCCAAAATCGCCGCCGATAATCGTGCCCCCCCCGATCGGATTCCGAGAA

mRNA sequence

GGCGTTAAGGCCAAGCCATTGGAGCCGCAACAGGATTTAAACAAGAAGAAGATTTATTTTCTTTTACAGTTGCCCAAAATCGCCGCCGATAATCGTGCCCCCCCCGATCGGATTCCGAGAA

Coding sequence (CDS)

GGCGTTAAGGCCAAGCCATTGGAGCCGCAACAGGATTTAAACAAGAAGAAGATTTATTTTCTTTTACAGTTGCCCAAAATCGCCGCCGATAATCGTGCCCCCCCCGATCGGATTCCGAGA

Protein sequence

GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR
Homology
BLAST of MELO3C028414 vs. NCBI nr
Match: KAA0062351.1 (DUF4228 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 1.9e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0

Query: 1  GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 41
          GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR
Sbjct: 51 GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 90

BLAST of MELO3C028414 vs. NCBI nr
Match: TYK26626.1 (DUF4228 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 1.9e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0

Query: 1  GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 41
          GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR
Sbjct: 51 GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 90

BLAST of MELO3C028414 vs. NCBI nr
Match: XP_004140307.1 (uncharacterized protein At1g66480 [Cucumis sativus] >KAE8648427.1 hypothetical protein Csa_008184 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0

Query: 1  GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 41
          GVKAKPLEPQQDLN+KKIYFLLQLPKIAADNR PPDRIPR
Sbjct: 51 GVKAKPLEPQQDLNRKKIYFLLQLPKIAADNRPPPDRIPR 90

BLAST of MELO3C028414 vs. NCBI nr
Match: XP_038876258.1 (uncharacterized protein At1g66480-like [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 6.9e-11
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0

Query: 1  GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 41
          GVKAKPLEPQQDLNKKKIYFLLQLPKI A+NR  PDRIPR
Sbjct: 51 GVKAKPLEPQQDLNKKKIYFLLQLPKITAENRPRPDRIPR 90

BLAST of MELO3C028414 vs. NCBI nr
Match: XP_022956667.1 (uncharacterized protein At1g66480-like [Cucurbita moschata])

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0

Query: 1  GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 41
          GVKAKPLEPQQDLNKKKIYFLLQLPKI+  N  PP+RIPR
Sbjct: 51 GVKAKPLEPQQDLNKKKIYFLLQLPKIS--NPEPPERIPR 88

BLAST of MELO3C028414 vs. ExPASy TrEMBL
Match: A0A5A7V9K2 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001150 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.4e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0

Query: 1  GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 41
          GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR
Sbjct: 51 GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 90

BLAST of MELO3C028414 vs. ExPASy TrEMBL
Match: A0A5D3DSE2 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002680 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.4e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0

Query: 1  GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 41
          GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR
Sbjct: 51 GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 90

BLAST of MELO3C028414 vs. ExPASy TrEMBL
Match: A0A0A0KRN5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G418770 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.9e-13
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0

Query: 1  GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 41
          GVKAKPLEPQQDLN+KKIYFLLQLPKIAADNR PPDRIPR
Sbjct: 51 GVKAKPLEPQQDLNRKKIYFLLQLPKIAADNRPPPDRIPR 90

BLAST of MELO3C028414 vs. ExPASy TrEMBL
Match: A0A6J1GX06 (uncharacterized protein At1g66480-like OS=Cucurbita moschata OX=3662 GN=LOC111458324 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.0e-09
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0

Query: 1  GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 41
          GVKAKPLEPQQDLNKKKIYFLLQLPKI+  N  PP+RIPR
Sbjct: 51 GVKAKPLEPQQDLNKKKIYFLLQLPKIS--NPEPPERIPR 88

BLAST of MELO3C028414 vs. ExPASy TrEMBL
Match: A0A6J1JKD4 (uncharacterized protein At1g66480-like OS=Cucurbita maxima OX=3661 GN=LOC111487701 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.1e-09
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 0

Query: 1  GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRIPR 41
          GVKAKPLEPQQDLNKKKIYFLLQLPKI   N  PP+RIPR
Sbjct: 51 GVKAKPLEPQQDLNKKKIYFLLQLPKIT--NPEPPERIPR 88

BLAST of MELO3C028414 vs. TAIR 10
Match: AT1G66480.1 (plastid movement impaired 2 )

HSP 1 Score: 42.4 bits (98), Expect = 1.0e-04
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 0

Query: 1  GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRA 34
          GV++KPLEP Q L  KK YFL++LPK+  +  A
Sbjct: 52 GVRSKPLEPNQTLKPKKTYFLVELPKLPPETTA 84

BLAST of MELO3C028414 vs. TAIR 10
Match: AT1G71015.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01340.1); Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 3.0e-04
Identity = 15/26 (57.69%), Postives = 23/26 (88.46%), Query Frame = 0

Query: 1  GVKAKPLEPQQDLNKKKIYFLLQLPK 27
          G++AKPLEP Q+L  K+IYF+++LP+
Sbjct: 51 GIRAKPLEPHQNLESKRIYFMVELPR 76

BLAST of MELO3C028414 vs. TAIR 10
Match: AT5G37840.1 (BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 39.3 bits (90), Expect = 8.7e-04
Identity = 18/38 (47.37%), Postives = 23/38 (60.53%), Query Frame = 0

Query: 1  GVKAKPLEPQQDLNKKKIYFLLQLPKIAADNRAPPDRI 39
          GV+AKPLEP Q L     YFL+ LP +   N+ P  R+
Sbjct: 52 GVRAKPLEPNQILKPNHTYFLVDLPPVDKRNKLPYRRV 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0062351.11.9e-13100.00DUF4228 domain-containing protein [Cucumis melo var. makuwa][more]
TYK26626.11.9e-13100.00DUF4228 domain-containing protein [Cucumis melo var. makuwa][more]
XP_004140307.11.6e-1295.00uncharacterized protein At1g66480 [Cucumis sativus] >KAE8648427.1 hypothetical p... [more]
XP_038876258.16.9e-1190.00uncharacterized protein At1g66480-like [Benincasa hispida][more]
XP_022956667.11.4e-0885.00uncharacterized protein At1g66480-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V9K29.4e-14100.00DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DSE29.4e-14100.00DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A0A0KRN57.9e-1395.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G418770 PE=4 SV=1[more]
A0A6J1GX067.0e-0985.00uncharacterized protein At1g66480-like OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
A0A6J1JKD49.1e-0985.00uncharacterized protein At1g66480-like OS=Cucurbita maxima OX=3661 GN=LOC1114877... [more]
Match NameE-valueIdentityDescription
AT1G66480.11.0e-0454.55plastid movement impaired 2 [more]
AT1G71015.13.0e-0457.69unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G37840.18.7e-0447.37BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028414.1MELO3C028414.1mRNA