MELO3C028411 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028411
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr04: 15920940 .. 15921365 (+)
RNA-Seq Expression	MELO3C028411
Synteny	MELO3C028411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGGAGATTGCGGAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCTAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

mRNA sequence

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGGAGATTGCGGAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCTAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

Coding sequence (CDS)

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGGAGATTGCGGAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCTAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

Protein sequence

MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFRILREMLELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

Homology

[Close]

BLAST of MELO3C028411 vs. NCBI nr
Match: KAA0033744.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046274.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049705.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0057135.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

Query: 61  DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMLELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLREIAEWPARNLANDNHVRTEFFRILREM ELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of MELO3C028411 vs. NCBI nr
Match: KAA0065692.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 72  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 131

Query: 61  DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMLELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLREIAEWPARNLANDNHVRTEFFRILREM ELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 132 DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 191

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 192 VLMPEDEREGFCRVLLRDIER 212

[Close]

BLAST of MELO3C028411 vs. NCBI nr
Match: TYK10915.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.0e-69
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 116 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 175

Query: 61  DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMLELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLR+IAEWPARNLANDNHVRTEFFRILREM ELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 176 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 235

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 236 VLMPEDEREGFCRVLLRDIER 256

[Close]

BLAST of MELO3C028411 vs. NCBI nr
Match: KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.0e-69
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

Query: 61  DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMLELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLR+IAEWPARNLANDNHVRTEFFRILREM ELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of MELO3C028411 vs. NCBI nr
Match: TYK21395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.0e-69
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

Query: 61  DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMLELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLR+IAEWPARNLANDNHVRTEFFRILREM ELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of MELO3C028411 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.6e-70
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

Query: 61  DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMLELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLREIAEWPARNLANDNHVRTEFFRILREM ELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of MELO3C028411 vs. ExPASy TrEMBL
Match: A0A5A7VBM4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G001600 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.6e-70
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 72  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 131

Query: 61  DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMLELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLREIAEWPARNLANDNHVRTEFFRILREM ELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 132 DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 191

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 192 VLMPEDEREGFCRVLLRDIER 212

[Close]

BLAST of MELO3C028411 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

Query: 61  DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMLELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLR+IAEWPARNLANDNHVRTEFFRILREM ELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of MELO3C028411 vs. ExPASy TrEMBL
Match: A0A5D3CHA0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00970 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 116 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 175

Query: 61  DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMLELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLR+IAEWPARNLANDNHVRTEFFRILREM ELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 176 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 235

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 236 VLMPEDEREGFCRVLLRDIER 256

[Close]

BLAST of MELO3C028411 vs. ExPASy TrEMBL
Match: A0A5A7SRU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00100 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

Query: 61  DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMLELTSLDRALLQRHLLSRMDDLRGF 120
           DQTNEQLR+IAEWPARNLANDNHVRTEFFRILREM ELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

The following BLAST results are available for this feature:

BLAST of MELO3C028411 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033744.1	1.4e-69	99.29	retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon...	[more]
KAA0065692.1	1.4e-69	99.29	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK10915.1	3.0e-69	98.58	retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon p...	[more]
KAA0032766.1	3.0e-69	98.58	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK21395.1	3.0e-69	98.58	retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon p...	[more]

BLAST of MELO3C028411 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRV1	6.6e-70	99.29	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VBM4	6.6e-70	99.29	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCZ1	1.5e-69	98.58	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CHA0	1.5e-69	98.58	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SRU1	1.5e-69	98.58	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C028411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 136..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028411.1	MELO3C028411.1	mRNA