MELO3C028400 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028400
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon gag protein
Location	chr01: 23268696 .. 23268823 (-)
RNA-Seq Expression	MELO3C028400
Synteny	MELO3C028400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACATGTGTTGCAACCGAGAAGCTCGTCATCTCAAATATGTTGCAGCCAAGAAGATCGTCATTCTTAAATATGTTGCAGCAGAGAAGATCGTCGTCTCAAATATGTTGTAGCTGAGAATGTCATCGT

mRNA sequence

TCACATGTGTTGCAACCGAGAAGCTCGTCATCTCAAATATGTTGCAGCCAAGAAGATCGTCATTCTTAAATATGTTGCAGCAGAGAAGATCGTCGTCTCAAATATGTTGTAGCTGAGAATGTCATCGT

Coding sequence (CDS)

ATGTGTTGCAACCGAGAAGCTCGTCATCTCAAATATGTTGCAGCCAAGAAGATCGTCATTCTTAAATATGTTGCAGCAGAGAAGATCGTCGTCTCAAATATGTTGTAG

Protein sequence

MCCNREARHLKYVAAKKIVILKYVAAEKIVVSNML

Homology

[Close]

BLAST of MELO3C028400 vs. NCBI nr
Match: TYK18585.1 (hypothetical protein E5676_scaffold119G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MCCNREARHLKYVAAKKIVILKYVAAEKIVVSNML 36
           +CC RE R LKYVAAKKIV+LKYVAAEKI+VSNML
Sbjct: 456 ICCRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML 490

[Close]

BLAST of MELO3C028400 vs. NCBI nr
Match: KAA0064215.1 (hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MCCNREARHLKYVAAKKIVILKYVAAEKIVVSNML 36
           +CC RE R LKYVAAKKIV+LKYVAAEKI+VSNML
Sbjct: 347 ICCRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML 381

[Close]

BLAST of MELO3C028400 vs. NCBI nr
Match: KAA0056374.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK29143.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MCCNREARHLKYVAAKKIVILKYVAAEKIVVSNML 36
           +CC RE R LKYVAAKKI++LKYVAAEKI+VSNML
Sbjct: 330 ICCRREGRPLKYVAAKKIIVLKYVAAEKIIVSNML 364

[Close]

BLAST of MELO3C028400 vs. NCBI nr
Match: TYK04576.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MCCNREARHLKYVAAKKIVILKYVAAEKIVVSNML 36
           +CC RE R LKY+AAKKIV+LKYVAAEKI+VSNML
Sbjct: 700 ICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNML 734

[Close]

BLAST of MELO3C028400 vs. NCBI nr
Match: KAA0051981.1 (hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MCCNREARHLKYVAAKKIVILKYVAAEKIVVSNML 36
           +CC RE R LKY+AAKKIV+LKYVAAEKI+VSNML
Sbjct: 296 ICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNML 330

[Close]

BLAST of MELO3C028400 vs. ExPASy TrEMBL
Match: A0A5A7VE92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001630 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-06
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MCCNREARHLKYVAAKKIVILKYVAAEKIVVSNML 36
           +CC RE R LKYVAAKKIV+LKYVAAEKI+VSNML
Sbjct: 347 ICCRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML 381

[Close]

BLAST of MELO3C028400 vs. ExPASy TrEMBL
Match: A0A5D3D4V9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001120 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-06
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MCCNREARHLKYVAAKKIVILKYVAAEKIVVSNML 36
           +CC RE R LKYVAAKKIV+LKYVAAEKI+VSNML
Sbjct: 456 ICCRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML 490

[Close]

BLAST of MELO3C028400 vs. ExPASy TrEMBL
Match: A0A5D3DZF3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002920 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-05
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MCCNREARHLKYVAAKKIVILKYVAAEKIVVSNML 36
           +CC RE R LKYVAAKKI++LKYVAAEKI+VSNML
Sbjct: 330 ICCRREGRPLKYVAAKKIIVLKYVAAEKIIVSNML 364

[Close]

BLAST of MELO3C028400 vs. ExPASy TrEMBL
Match: A0A5D3C2C8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002110 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-05
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MCCNREARHLKYVAAKKIVILKYVAAEKIVVSNML 36
           +CC RE R LKY+AAKKIV+LKYVAAEKI+VSNML
Sbjct: 700 ICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNML 734

[Close]

BLAST of MELO3C028400 vs. ExPASy TrEMBL
Match: A0A5A7UEK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004640 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-05
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MCCNREARHLKYVAAKKIVILKYVAAEKIVVSNML 36
           +CC RE R LKY+AAKKIV+LKYVAAEKI+VSNML
Sbjct: 296 ICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNML 330

The following BLAST results are available for this feature:

BLAST of MELO3C028400 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18585.1	1.7e-05	82.86	hypothetical protein E5676_scaffold119G001120 [Cucumis melo var. makuwa]	[more]
KAA0064215.1	1.7e-05	82.86	hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa]	[more]
KAA0056374.1	2.2e-05	80.00	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK29143.1 retrotranspos...	[more]
TYK04576.1	2.2e-05	80.00	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0051981.1	2.2e-05	80.00	hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VE92	8.2e-06	82.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D4V9	8.2e-06	82.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DZF3	1.1e-05	80.00	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3C2C8	1.1e-05	80.00	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UEK9	1.1e-05	80.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C028400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028400.1	MELO3C028400.1	mRNA