MELO3C028399 (gene) Melon (DHL92) v4

Overview
NameMELO3C028399
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionULP_PROTEASE domain-containing protein
Locationchr06: 15528516 .. 15529699 (+)
RNA-Seq ExpressionMELO3C028399
SyntenyMELO3C028399
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGGTCCCCCGACGTTTTCATCCCTTTGCTCCGTCTTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTCTAAGGACTTCAACCCATACTTCTGACATGCTCTCTGACACGTTTTTTTGAGGTATAGGTCGGGAAGCGAGCTCATTTGAGGGAGAACTGTGGTGCGACCCAAAACGCTCCAAAAGATGGCCAATGCTTTCACTAGTGGGGAATGCTCGTCCGGTGTCAGAAACCACTGGAAATACACTTGCAGTGAAGGAAATGGATTGAGCTCGTGGGCTTCCGGTGCTCGTCCCAAAAAATGCGAGCCAGAATGTCCCAGACTCAGTTTTTTCGTCCTGGGGCAAAAAGCGGTCCCTCGACATTTTCTTCCCTTTGCTCCGTCTTGGTCATAAGTCTTTCGATCTTCGAGGCTCATACTCCGAGGACTTCAACCCACACTCCTAGCATACTCTTTGACACGTTTTCTAGAGGTATAGATCGGGAAGCGAGCTCGTTGGAGGGAGAACTATGGTGCAACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCGGTGTCAGAAACCACTGGAAATTCACTTGCAGCGAAGGAAACGGGCTGAGCTCAAGGACTTCCAGTGCTCGTCCCAAGAAAACCCGAGCGACAATGCCTCGGACTGAGTTTTCTCGTCTTGGGGCAAAAAGTAGTCTCCCGATGGTTTCTTCCCTTTGCGCCGTATTGGTCATAAGTCTTTCAATCTTCGGAGTTCGTACTCCGAGGAATTTAACCCACACTCCTGGCATGCTCCCTGACACGTTTTTCGGAGGTATGGGTTGGGAAGCGAGCTCGTTGGAGTGAGAATTATGGTGCGATCGAAAACGGTCTAAAAGATGGTCAATGCTTCTCACAAGTGGAGAATGCTCGTCCGTGTCAGAAACCACTGGAAATGCACTTGCAACGAAGGAAACGAGCTGAGCTTAAGGACTCCCGGTACTCCTCCCAAGAATACGCAAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGCAAAAAGTGATCCCTGATGTTTTCTTCCCTTTGCTCCGTATTCATCATAAGTCTTTCGATCTTCTAGGCTCGTACTTCGAGAACTTCAACCCACACTCCTGGCATGCTCTCTGACACGTTTTCTGGAGGTAT

mRNA sequence

GCGGTCCCCCGACGTTTTCATCCCTTTGCTCCGTCTTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTTCGAGAACTTCAACCCACACTCCTGGCATGCTCTCTGACACGTTTTCTGGAGGTAT

Coding sequence (CDS)

GGTCCCCCGACGTTTTCATCCCTTTGCTCCGTCTTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTTCGAGAACTTCAACCCACACTCCTGGCATGCTCTCTGACACGTTTTCTGGAGGT

Protein sequence

GPPTFSSLCSVLVISLSIFGARTSRTSTHTPGMLSDTFSGG
Homology
[Close]
BLAST of MELO3C028399 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 3.9e-09
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1    GPPTFSSLCSVLVISLSIFGARTSRTSTHTPGMLSDTFSG 41
            GPPT SSLCSVLVISLSIFGART RTSTHT GML DTFSG
Sbjct: 1384 GPPTVSSLCSVLVISLSIFGARTLRTSTHTSGMLPDTFSG 1423

[Close]
BLAST of MELO3C028399 vs. NCBI nr
Match: TYK15439.1 (uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-08
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1   GPPTFSSLCSVLVISLSIFGARTSRTSTHTPGMLSDTFSGG 42
           GPPT SS+CSVLVI LSIFGA   RTSTHTPGML D FSGG
Sbjct: 132 GPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLPDMFSGG 172

[Close]
BLAST of MELO3C028399 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 6.2e-07
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 2   PPTFSSLCSVLVISLSIFGARTSRTSTHTPGMLSDTFS 40
           PPT S+LCSVLV SLSIFGA T RTSTHTPGML DTFS
Sbjct: 312 PPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFS 349

[Close]
BLAST of MELO3C028399 vs. NCBI nr
Match: KAA0059489.1 (ribosomal protein L5 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 2.4e-06
Identity = 32/41 (78.05%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 1  GPPTFSSLCSVLVISLSIFGARTSRTSTHTPGMLSDTFSGG 42
          G PT SSLCSV VISLSIFGAR S TS HTPGML  TFS G
Sbjct: 14 GSPTVSSLCSVFVISLSIFGARASSTSVHTPGMLLHTFSQG 54

[Close]
BLAST of MELO3C028399 vs. NCBI nr
Match: KAA0037172.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 5.2e-06
Identity = 32/40 (80.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 2  PPTFSSLCSVLVISLSIFGARTSRTSTHTPGMLSDTFSGG 42
          PPT SSLC VL ISLSIF A T RTSTHTPGML DTFS G
Sbjct: 56 PPTVSSLCFVLAISLSIFEACTLRTSTHTPGMLPDTFSQG 95

[Close]
BLAST of MELO3C028399 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-09
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1    GPPTFSSLCSVLVISLSIFGARTSRTSTHTPGMLSDTFSG 41
            GPPT SSLCSVLVISLSIFGART RTSTHT GML DTFSG
Sbjct: 1384 GPPTVSSLCSVLVISLSIFGARTLRTSTHTSGMLPDTFSG 1423

[Close]
BLAST of MELO3C028399 vs. ExPASy TrEMBL
Match: A0A5D3CZ27 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00010 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-08
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1   GPPTFSSLCSVLVISLSIFGARTSRTSTHTPGMLSDTFSGG 42
           GPPT SS+CSVLVI LSIFGA   RTSTHTPGML D FSGG
Sbjct: 132 GPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLPDMFSGG 172

[Close]
BLAST of MELO3C028399 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-07
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 2   PPTFSSLCSVLVISLSIFGARTSRTSTHTPGMLSDTFS 40
           PPT S+LCSVLV SLSIFGA T RTSTHTPGML DTFS
Sbjct: 312 PPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFS 349

[Close]
BLAST of MELO3C028399 vs. ExPASy TrEMBL
Match: A0A5A7V129 (Ribosomal protein L5 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G002350 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 32/41 (78.05%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 1  GPPTFSSLCSVLVISLSIFGARTSRTSTHTPGMLSDTFSGG 42
          G PT SSLCSV VISLSIFGAR S TS HTPGML  TFS G
Sbjct: 14 GSPTVSSLCSVFVISLSIFGARASSTSVHTPGMLLHTFSQG 54

[Close]
BLAST of MELO3C028399 vs. ExPASy TrEMBL
Match: A0A5D3CQ36 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00910 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 32/40 (80.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 2  PPTFSSLCSVLVISLSIFGARTSRTSTHTPGMLSDTFSGG 42
          PPT SSLC VL ISLSIF A T RTSTHTPGML DTFS G
Sbjct: 56 PPTVSSLCFVLAISLSIFEACTLRTSTHTPGMLPDTFSQG 95

The following BLAST results are available for this feature:
BLAST of MELO3C028399 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062888.13.9e-0990.00non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
TYK15439.13.3e-0880.49uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa][more]
TYK22521.16.2e-0784.21uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa][more]
KAA0059489.12.4e-0678.05ribosomal protein L5 [Cucumis melo var. makuwa][more]
KAA0037172.15.2e-0680.00putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nucleas... [more]
BLAST of MELO3C028399 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028399 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V5J21.9e-0990.00Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
A0A5D3CZ271.6e-0880.49ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A5D3DFP23.0e-0784.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V1291.1e-0678.05Ribosomal protein L5 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3CQ362.5e-0680.00Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of MELO3C028399 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028399.1MELO3C028399.1mRNA