MELO3C028398 (gene) Melon (DHL92) v4

Overview
NameMELO3C028398
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag/pol protein
Locationchr06: 15527199 .. 15529089 (+)
RNA-Seq ExpressionMELO3C028398
SyntenyMELO3C028398
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCCTGACACGTTTTCCGGAGGTATAGGTTGGGAAGCGAGCTTGTTGATGAGAGAACTGTGGTGCGATAAAAAACGATCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCAGTGTCAAAAACCACAGAAAATGCACTTGTAGCGAAGGAAATAGGCTGAGCTCGAGGACTTCTAGTGCTCATCCCAAGAAAACGCGAGTGAGAATGCCCCGGACTCAGTTTTCTCATCCTGGGACAAAAAGCGATCTCCCGACGGTTTCTTCCCTTTGCTCCGTATTTGTCATAAGTCTTTCGATCTTTGGTGCTCGTACTTTGAGGACTTCAACCCACACTTCTGGCATGCTCCCTGACACGTTTTCTGAAGGTATAGGTCGTGAAGCGAGCTCGTTGAGGGGAGAACTGTGGTGCGATCCAAAACGGTCCAAAACATGGCCAATGCTTCTAACGAGTGGCGAACGCTCGTTCGGTGTCAGAAACCACTGGAAATGCACTTACAGCGAAGGAAACGGGCTGAGCTCGAGGACTTCCAGTGCTCGTCCCAAGAAAACGCGAGCGAGAATTTCCCGAACTCAGTTTTCTCGTTATGGGACAAAAAGTGTCCCACGACGGTTTCTTCCCTTTGCTCCATATTGGTCATAAGTCTTTCGATCATCGGGGCTCGTACTCCAAGGACTTCAACCAACACTCTTGGCATAACCCTTGACACGTTTTCTGAAGGTATAGGTTGGGAAGCGAACTCGTGGGAGGGAGAATTGTAGTGCGACCCAAAATGGTCCAAAAGATGGTCAATGCTTCTAACGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTGAAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCTAGGACTCTCAGTGCTCATCCCAAGAAAACACGAGCGAGAATGCCCCGTACTCAGGTTTCTCGTCCTGGGGCAAAAAGCGGTCCCCCGACGTTTTCATCCCTTTGCTCTGTATTGATCATAAGTCTTTTGATCTTCGAGGCTCGTACTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACATGTTTTCCGAAGGTATAGGACGGGAAGCGAGCTCGTTAAAGGGAAAATTGTGGTGTGACCCAAAATGGTCCAAAAGATGGCGAATTCTTCCAACGAGTGGTGAACGTTCGTCCGGTATTAGAAACCACTGGAAATGCACTTGCAACGAAGGAAACGGGCTGAGCTCGTGGACTTCCAATGCTCGTCCCCAGAAAACACGAGCGAGAATGTCCCGGACTCAGTTTTCTCGTCCTGGGACAAAAAGCGGTCCCCCGACGTTTTCATCCCTTTGCTCCGTCTTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTCTAAGGACTTCAACCCATACTTCTGACATGCTCTCTGACACGTTTTTTTGAGGTATAGGTCGGGAAGCGAGCTCATTTGAGGGAGAACTGTGGTGCGACCCAAAACGCTCCAAAAGATGGCCAATGCTTTCACTAGTGGGGAATGCTCGTCCGGTGTCAGAAACCACTGGAAATACACTTGCAGTGAAGGAAATGGATTGAGCTCGTGGGCTTCCGGTGCTCGTCCCAAAAAATGCGAGCCAGAATGTCCCAGACTCAGTTTTTTCGTCCTGGGGCAAAAAGCGGTCCCTCGACATTTTCTTCCCTTTGCTCCGTCTTGGTCATAAGTCTTTCGATCTTCGAGGCTCATACTCCGAGGACTTCAACCCACACTCCTAGCATACTCTTTGACACGTTTTCTAGAGGTATAGATCGGGAAGCGAGCTCGTTGGAGGGAGAACTATGGTGCAACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGT

mRNA sequence

ATGCTCCCTGACACGTTTTCCGGAGGTATAGATCGGGAAGCGAGCTCGTTGGAGGGAGAACTATGGTGCAACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGT

Coding sequence (CDS)

ATGCTCCCTGACACGTTTTCCGGAGGTATAGATCGGGAAGCGAGCTCGTTGGAGGGAGAACTATGGTGCAACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCG

Protein sequence

MLPDTFSGGIDREASSLEGELWCNPKRSKRWPMLPTSGERS
Homology
[Close]
BLAST of MELO3C028398 vs. NCBI nr
Match: KAA0066117.1 (mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 8.9e-14
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0 

Query: 1   MLPDTFSGGIDREASSLEGELWCNPKRSKRWPMLPTSGERS 42
           MLPDTFSGGI REASSLEGELWC+PKRSKRWP LPTSGERS
Sbjct: 179 MLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERS 219

[Close]
BLAST of MELO3C028398 vs. NCBI nr
Match: KAA0026022.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 2.0e-13
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0 

Query: 1  MLPDTFSGGIDREASSLEGELWCNPKRSKRWPMLPTSGERS 42
          MLPD FSGGI REA+SLEGELWC+PKRSKRWPMLPTSGERS
Sbjct: 1  MLPDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTSGERS 41

[Close]
BLAST of MELO3C028398 vs. NCBI nr
Match: TYK15439.1 (uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 4.4e-13
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 0 

Query: 1   MLPDTFSGGIDREASSLEGELWCNPKRSKRWPMLPTSGERS 42
           MLPD FSGGIDREA SLEGELWC+PKRS+RWPMLPTSG+RS
Sbjct: 164 MLPDMFSGGIDREARSLEGELWCDPKRSERWPMLPTSGKRS 204

[Close]
BLAST of MELO3C028398 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 1   MLPDTFSGGIDREASSLEGELWCNPKRSKRWPMLPTSGERS 42
           MLPDTFSGGI REASSLEGEL C+PK SKRWPMLPT GERS
Sbjct: 397 MLPDTFSGGIGREASSLEGELLCDPKPSKRWPMLPTGGERS 437

[Close]
BLAST of MELO3C028398 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 5.4e-11
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 1    MLPDTFSGGIDREASSLEGELWCNPKRSKRWPMLPTSGERS 42
            MLPD FS GI +EASSLEGELWCNPKRSKRW MLPTS ERS
Sbjct: 1583 MLPDMFSRGIGQEASSLEGELWCNPKRSKRWTMLPTSVERS 1623

[Close]
BLAST of MELO3C028398 vs. ExPASy TrEMBL
Match: A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-14
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0 

Query: 1   MLPDTFSGGIDREASSLEGELWCNPKRSKRWPMLPTSGERS 42
           MLPDTFSGGI REASSLEGELWC+PKRSKRWP LPTSGERS
Sbjct: 179 MLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERS 219

[Close]
BLAST of MELO3C028398 vs. ExPASy TrEMBL
Match: A0A5A7SLK2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29721G00010 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.6e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0 

Query: 1  MLPDTFSGGIDREASSLEGELWCNPKRSKRWPMLPTSGERS 42
          MLPD FSGGI REA+SLEGELWC+PKRSKRWPMLPTSGERS
Sbjct: 1  MLPDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTSGERS 41

[Close]
BLAST of MELO3C028398 vs. ExPASy TrEMBL
Match: A0A5D3CZ27 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00010 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-13
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 0 

Query: 1   MLPDTFSGGIDREASSLEGELWCNPKRSKRWPMLPTSGERS 42
           MLPD FSGGIDREA SLEGELWC+PKRS+RWPMLPTSG+RS
Sbjct: 164 MLPDMFSGGIDREARSLEGELWCDPKRSERWPMLPTSGKRS 204

[Close]
BLAST of MELO3C028398 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.3e-12
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 1   MLPDTFSGGIDREASSLEGELWCNPKRSKRWPMLPTSGERS 42
           MLPDTFSGGI REASSLEGEL C+PK SKRWPMLPT GERS
Sbjct: 397 MLPDTFSGGIGREASSLEGELLCDPKPSKRWPMLPTGGERS 437

[Close]
BLAST of MELO3C028398 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-11
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 1    MLPDTFSGGIDREASSLEGELWCNPKRSKRWPMLPTSGERS 42
            MLPD FS GI +EASSLEGELWCNPKRSKRW MLPTS ERS
Sbjct: 1583 MLPDMFSRGIGQEASSLEGELWCNPKRSKRWTMLPTSVERS 1623

The following BLAST results are available for this feature:
BLAST of MELO3C028398 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066117.18.9e-1492.68mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo v... [more]
KAA0026022.12.0e-1390.24Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
TYK15439.14.4e-1387.80uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa][more]
TYK22521.11.1e-1187.80uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa][more]
KAA0062888.15.4e-1185.37non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
BLAST of MELO3C028398 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028398 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VGB14.3e-1492.68Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo... [more]
A0A5A7SLK29.6e-1490.24Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5D3CZ272.1e-1387.80ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A5D3DFP25.3e-1287.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V5J22.6e-1185.37Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
BLAST of MELO3C028398 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028398.1MELO3C028398.1mRNA