MELO3C028368 (gene) Melon (DHL92) v4

Overview
NameMELO3C028368
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase
Locationchr07: 6588909 .. 6592882 (-)
RNA-Seq ExpressionMELO3C028368
SyntenyMELO3C028368
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAGCATGCCAGGAGTGTGGGTTGAAGTTCTCGAAGTACGAGCCTCAAAGATCGAAAAACTTAAGACCAATACGAAGCAAAGGGAAAAATCGTCGGGGGACCACTTTTTACCACAGGACTAGAAAACTTAGTACAGAGCATTCTCGCTCGTGTTTTCTTGGGACGAACACGGGAAGTCCTCGAGCTCAACCTATTTCTTTTAATGCATGTGCATTTCCAGTGGTTTCTGTCACCGGACGAGGGTTCGACACTCGTTGGAAGCATTGACCATCTTTTGGACCGTTTTGGGTCGCACCTTAGTTCTCCCTCCAATGAGCTCGCTCAAAACCTATACCTTGGGAAAATATATCAGGGAGCATGCCAGTTGCATGGGTTGAAGTCCTCGGAGTACGAGCCCCAATGATCAAAAGACTTATGACCAATACGAAGCAAAGGGAAGAAACAATCGGGGACCGCTTTTTACCCAGGTTAAGAAAACTAAGTCAGAGGCATTCTCGCTTGCATTTTCATGGGACGAATACTGGAATTCCTCGAGCTCAGGTTGTTTCCTTATCTACAATTGCATTTCCAGTGGTTTCTAACACTGGACGAACGTTCGCCGCTCGTTGGAAGCATTGGCCATCTTTTGTACCGTTTTGGGTTGCACCTTTGTCGTCCTTATAAAGAGCTCGCTTCCTGAACTAAACCTTTGGACAACGTGTTAGGGAGCATTCCAGGAGTGTGGGTTGAAGTTTTCGAAGTACGAGCCCCAAAGAATAAAAAACTTATGACCAATTTGAAGCAAAGGGAAAAACTGTCGGGGGACCGCTTTTTACCATAGGACTAGAAAACTTAGTACAGGGCTTTCTCGCTCGTGTTTTCTTGGGACGAACACTAGAAATCCTCAAACTCAACCCGTTTCCTTCAATGCAGGTACATTTTCAGTTGTTTCTGTCACGGGACGAGGTTTCGGCACTCGTTGGAAGCATTGGCCATCTTTTGGACTGTTTTGGGTCGCATCTTAGTTCTCCCTCCATCCAGCTCGGTTCTCAACCTATACCTTGGGAAAGTGTGTCACGAAGCATGCCAGGAGTGTGGGTTGAAGTCCTCGAAGCACGAGCCCTAAAGATCGAAAGACTTATGACCAATACGAAGCAAAAGGAAGAAAGAGTCGGGGACCGCTTTTTACCTCAGGTTGAGAAAACTGAGTCCGAGGCATTCTCGCTCGCATTTTCTTGGGATGAACATCGGAAGCCCTCGAGCTCAGCTTGTTTCCTTCACTACAAGTTCATTTCAAGTGGTTTATGACACAGACGACCGTTCGCCACTCATTGGAAGCATTGGCCATCTTTTGGATCGTTATGGGTGGCACCTTAGTTCTCCACCAACGAGCTCGCTTCCCGACCTATACCTTGGGAAAACGTGTCAGATAGCATGCCAAGAGTGTTGGTTAAAGTCCTCGGAGTACGAGCCCCAATGATCAAAAGACTTATGACCAATACGAAGCAAAGGCAAGAAACCGTAGGGGGACCGCTTTTTACTTTAGGACGAGAAAACTGAGTCCGGAACATTCTCGCTCACGTTTTCTTGGAACGAACACCGGAAGTCCTCAAGCTCAGCCCATTTTTTTCAAGGCAGATGCATTTCCAGTTGTTTCTGACACCATACGAGGATTCGCCACTCGTTGAAGCATTGGCCATCTTTTGGACAATTTTGGATCGCATCTTAGTTCTCCCTCCACCGAGCTCGGTTCCGGACCAATACCTTGGGAAAATGTGTCACGGAGCATGCTAGAAGTGTGGATTGAAGTCCTCAAAGCACGAGCCACGAAGATCGAAATATTTATGACCAATACGAACCAAAGGGAAGAAACCGTTGGGGGACCACTTTTTACCCCAGGACGAGAAAACTGAGTGCGGGGCATTCTCTCTCGCATTTTCTTGGCACAAACACTGGAAACCCTCGAGCTCAGCCCGTTTCCTTCACTGCAAGTAAATTTCCAGTAGTTTCTGACACCGCGTTCGCCACTCGTTGGAAGCATTGGCCATCTTTTGGACAGTTTTGGGTAGCACCTTAGTTCTCCCTCCAAGGAGCTCGGTTCCTGACCTATACCTTGGGAAAATGTGTCAAGGAGCATGCCAAGTATGTGGGTTGAAGTCCTCAAAGCACGAGTCCCGTAGATCGAAAGACTTATGACCAAGATGAAGCAAAGGGAACAAACAGTCGAGGGACCACTTTTTACCCCAGGACGAGAAAACTGAGTTCGGGGAATTCTCCCATGCATTTGCTTGGGACGAATATTGAAAATCCTCGAGCTCAGACCATTTCCTTCACTGCAAGTGCATTTCTGGTGGTTTCTGACACCGGACGAGCGTTCGCCACTCGTTGGAAGCATTTGTCATCTTTTGGGCCGTTGTGGGTCGCACCTTAGGTCCCCCTCCAATGAGCTCGCTTCCCGACCTATACCTTGGGAAATTGTGTTAGGGCACATGTAAAGAATGTGGATTGAAGTCCTCGGAGTATGAGCCCCAACGATCAAAAGACTTATGACCAATATGAAGTAAAGGGAAGAAATCGTCGGGGGACCACTTTTTGCCCTAGGACGAGAAAACTGACTGCGGGGCATTCTCTCTCGCATTTTCTTGGGAGGAACACCAGAAATCCTTGAGCTCAGCCCGTTTCCTTTGCTATAAATGCATTTCCAGTAAACACCAGAAATCTTTTCGACCGTTTAAGGTCGCACCTTAGTTCTTCCTCCAAGGAGCTCGGTTCCTGACCTATACTTTGGGGAAACGTGTCAGGGAGCATGTTAGGAATGTGGGTTGAAGTCCTCAAAGCACGAGCCCCGAAGATCGAAATACTTATGACCAAGACGAAGCAAAAGGAAGAAACCGCCGGAGGATCGCTTTTTACCCCAGGACGAGAAAACTGATTTAGGGACATTCTCCCACGCATTTTCTTGGGACGAACATTGAAAATCCTCGAGCTCAGCCTGTTTCCTTCACTAAAAGTGCATTTCCAGTGGTTTTTGACACCGGACAAGCGTTAGCCACTAGTCGGAAGCATTGGCCATCTTTTGGACCGTTTTGGGTCACACCTTAGTTCTTCCTCCAACGAGCTGGCTTCCCGACCTATACCCTGGGAAAATGTGTGACGGAATATGCCAGGAGTATGGGTTGAAGTCCTCAAAGCACGAGTCCAGAAGATCGAAAGTCTTATGACCAATACGAACCAAAGAGAAGAAACCGTTGGAAAACCACTTTTTACCCTAGGACGAGAAAACTGAGTGCGGGGCATTCTCCCTCGCATTTTCTTGGGACGAACACCGAAAATCCACGAGCTCAGCCCGTTTTCTTCGCTGCAAGTGCATTTCCAGTGGTTTCTGACACTGGAAGAGCGTTCGCCACTCGTTGGAAGAATTGGCCATCTTTTGGACCGTTTTGGGTCGCACCATAGTTCTCCCTCCAAGGAGCTCTGTTCCTGACCTACACCTTGGGAAAACGTTTCAAGGAGCATGCCAGGAATGTAGGTTGAAGTCCTCGAAGCACGAGCCCCGAAGATCGAAAGACTTATGACCAAGACGAAGCAAAGGGAAGAAACCGTCGGGAGACCGCTTTTTACCCCAAGACGAAAAAAGTGAGTTCGGGACATTCTCCCTCGCATTTTCTTGCGACGAACATCCAAAATCCTCGAGCTCAGCCCATTTCCTTCGCTACAAGTGCATTTCCAATTGTTTTTGACACCGGACAAAAGTTAGCCACTCGTTGGAAGCATTAGCCATATTTTGCACCGTTTTGGGTCGCACCTTAGTTCTCCCTCCAACGAGGTCGCTTCCCAACCTATACCCTGGGAAAATGTGTCACGGAGCATGCCAGGAGTATGGGTTGAAGGCCTTGAAGCACGAGTCCAGAAGATCGAAAGACTTATGACCAATACGAACCAAAGAGAAGAAACTGTCGGAAAACCACTTTTTACCCCAGGACGAGAAAACTGA

mRNA sequence

GGGAGCATGCCAGGAGTGTGGGTTGAAGTTCTCGAAGTACGAGCCCCAATGATCAAAAGACTTATGACCAATACGAAGCAAAGGCAAGAAACCGTAGGGGGACCGCTTTTTACCCAGGACGAGAAAACTGA

Coding sequence (CDS)

ATGCCAGGAGTGTGGGTTGAAGTTCTCGAAGTACGAGCCCCAATGATCAAAAGACTTATGACCAATACGAAGCAAAGGCAAGAAACCGTAGGGGGACCGCTTTTTACCCAGGACGAGAAAACT

Protein sequence

MPGVWVEVLEVRAPMIKRLMTNTKQRQETVGGPLFTQDEKT
Homology
[Close]
BLAST of MELO3C028368 vs. NCBI nr
Match: KAA0035523.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 1  MPGVWVEVLEVRAPMIKRLMTNTKQRQETVGGPLFTQDEK 41
          MPGVWVEVLEV+AP I+RLM NTKQR+ETVGG +  +DEK
Sbjct: 1  MPGVWVEVLEVKAPKIERLMINTKQREETVGGSILPKDEK 40

[Close]
BLAST of MELO3C028368 vs. NCBI nr
Match: KAA0032047.1 (hypothetical protein E6C27_scaffold134G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1  MPGVWVEVLEVRAPMIKRLMTNTKQRQETVGGPLFT 37
          MPGVWVEVL VRAP I+RLM+NTKQR+ETVGG LFT
Sbjct: 1  MPGVWVEVLRVRAPKIERLMSNTKQREETVGGSLFT 36

[Close]
BLAST of MELO3C028368 vs. NCBI nr
Match: MRQ44720.1 (hypothetical protein [Riemerella anatipestifer])

HSP 1 Score: 63.2 bits (152), Expect = 6.2e-07
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 1  MPGVWVEVLEVRAPMIKRLMTNTKQRQETVGGPLFT 37
          MPGVWVEVL  R P I+RLMTNT+QR+ETVGGPLFT
Sbjct: 21 MPGVWVEVLGARDPKIERLMTNTEQREETVGGPLFT 56

[Close]
BLAST of MELO3C028368 vs. NCBI nr
Match: WP_206746731.1 (hypothetical protein, partial [Helicobacter pylori])

HSP 1 Score: 63.2 bits (152), Expect = 6.2e-07
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 1  MPGVWVEVLEVRAPMIKRLMTNTKQRQETVGGPLFT 37
          MPGVWVEVL  R P I+RLMTNT+QR+ETVGGPLFT
Sbjct: 1  MPGVWVEVLGARDPKIERLMTNTEQREETVGGPLFT 36

[Close]
BLAST of MELO3C028368 vs. NCBI nr
Match: TYK01208.1 (uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 4.9e-04
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 1   MPGVWVEVLEVRAPMIKRLMTNTKQRQETVGGPLFT 37
           MPGVWV+VL  RAP I+RL+TNT+Q +ETV G LFT
Sbjct: 305 MPGVWVQVLGARAPKIERLITNTEQSEETVRGLLFT 340

[Close]
BLAST of MELO3C028368 vs. ExPASy TrEMBL
Match: A0A5A7SY75 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001800 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.0e-08
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 1  MPGVWVEVLEVRAPMIKRLMTNTKQRQETVGGPLFTQDEK 41
          MPGVWVEVLEV+AP I+RLM NTKQR+ETVGG +  +DEK
Sbjct: 1  MPGVWVEVLEVKAPKIERLMINTKQREETVGGSILPKDEK 40

[Close]
BLAST of MELO3C028368 vs. ExPASy TrEMBL
Match: A0A5A7SRN5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001510 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1  MPGVWVEVLEVRAPMIKRLMTNTKQRQETVGGPLFT 37
          MPGVWVEVL VRAP I+RLM+NTKQR+ETVGG LFT
Sbjct: 1  MPGVWVEVLRVRAPKIERLMSNTKQREETVGGSLFT 36

[Close]
BLAST of MELO3C028368 vs. ExPASy TrEMBL
Match: A0A5D3BQ75 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00560 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-04
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 1   MPGVWVEVLEVRAPMIKRLMTNTKQRQETVGGPLFT 37
           MPGVWV+VL  RAP I+RL+TNT+Q +ETV G LFT
Sbjct: 305 MPGVWVQVLGARAPKIERLITNTEQSEETVRGLLFT 340

[Close]
BLAST of MELO3C028368 vs. ExPASy TrEMBL
Match: A0A5A7V5Z6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001940 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-04
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 1   MPGVWVEVLEVRAPMIKRLMTNTKQRQETVGGPLFT 37
           MPGVWV+VL  RAP I+RL+TNT+Q +ETV G LFT
Sbjct: 352 MPGVWVQVLGARAPKIERLITNTEQSEETVRGLLFT 387

The following BLAST results are available for this feature:
BLAST of MELO3C028368 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0035523.11.2e-0775.00pol protein [Cucumis melo var. makuwa][more]
KAA0032047.12.1e-0783.33hypothetical protein E6C27_scaffold134G001510 [Cucumis melo var. makuwa][more]
MRQ44720.16.2e-0780.56hypothetical protein [Riemerella anatipestifer][more]
WP_206746731.16.2e-0780.56hypothetical protein, partial [Helicobacter pylori][more]
TYK01208.14.9e-0469.44uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa][more]
BLAST of MELO3C028368 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028368 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SY756.0e-0875.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28... [more]
A0A5A7SRN51.0e-0783.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BQ752.4e-0469.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V5Z62.4e-0469.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C028368 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028368.1MELO3C028368.1mRNA