MELO3C028367 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028367
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein NUCLEAR FUSION DEFECTIVE 4-like
Location	chr01: 20042225 .. 20042381 (+)
RNA-Seq Expression	MELO3C028367
Synteny	MELO3C028367

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCCAGCCGTCTCCCGCAGCCGCCACTCGAAGCCGATCCGCCGCGCGTGCCTCCAGCCGACGAACGAACCCGGAGCCGCTCCACGCCCGCGCGCCCGAAGCCGAAACCGAAGAGCCGCGTCCGCGTGTGAAGCCGCGCCGCGCGCCTGTGTAGCCG

mRNA sequence

CGCCCAGCCGTCTCCCGCAGCCGCCACTCGAAGCCGATCCGCCGCGCGTGCCTCCAGCCGACGAACGAACCCGGAGCCGCTCCACGCCCGCGCGCCCGAAGCCGAAACCGAAGAGCCGCGTCCGCGTGTGAAGCCGCGCCGCGCGCCTGTGTAGCCG

Coding sequence (CDS)

CGCCCAGCCGTCTCCCGCAGCCGCCACTCGAAGCCGATCCGCCGCGCGTGCCTCCAGCCGACGAACGAACCCGGAGCCGCTCCACGCCCGCGCGCCCGAAGCCGAAACCGAAGAGCCGCGTCCGCGTGTGAAGCCGCGCCGCGCGCCTGTGTAGCC

Protein sequence

RPAVSRSRHSKPIRRACLQPTNEPGAAPRPRARSRNRRAASACEAAPRACVA

Homology

[Close]

BLAST of MELO3C028367 vs. NCBI nr
Match: KAA0051879.1 (protein NUCLEAR FUSION DEFECTIVE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 39/48 (81.25%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   RPAVSRSRHSKPIRRACLQPTNEPGAAPRPRARSRNRRAASACEAAPR 49
           RPAVSRSRHSKPIRRACLQPTNEPGAA RPRARSRNR       AA R
Sbjct: 612 RPAVSRSRHSKPIRRACLQPTNEPGAAQRPRARSRNRDVLDQVIAAAR 659

[Close]

BLAST of MELO3C028367 vs. ExPASy TrEMBL
Match: A0A5A7UEF4 (Protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003240 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.3e-09
Identity = 39/48 (81.25%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   RPAVSRSRHSKPIRRACLQPTNEPGAAPRPRARSRNRRAASACEAAPR 49
           RPAVSRSRHSKPIRRACLQPTNEPGAA RPRARSRNR       AA R
Sbjct: 612 RPAVSRSRHSKPIRRACLQPTNEPGAAQRPRARSRNRDVLDQVIAAAR 659

The following BLAST results are available for this feature:

BLAST of MELO3C028367 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051879.1	1.1e-08	81.25	protein NUCLEAR FUSION DEFECTIVE 4-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028367 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028367 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UEF4	5.3e-09	81.25	Protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of MELO3C028367 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028367.1	MELO3C028367.1	mRNA