MELO3C028360 (gene) Melon (DHL92) v4

Overview
NameMELO3C028360
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr04: 6377346 .. 6377505 (-)
RNA-Seq ExpressionMELO3C028360
SyntenyMELO3C028360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGATTGAGAGAGACGACGTCAGCGGCCGGAAATCAGATGCGAGCGGGGGATGATGGAGGGAGAAAACGGCAACGATCGATCGGGTGGTGGAGGGAGAAATCGGCGACGATGGTGGAAGGCTTATACGACTGAGGTCGATCGGTTGGTGAAGGGAGAAAAC

mRNA sequence

GGATTGAGAGAGACGACGTCAGCGGCCGGAAATCAGATGCGAGCGGGGGATGATGGAGGGAGAAAACGGCAACGATCGATCGGGTGGTGGAGGGAGAAATCGGCGACGATGGTGGAAGGCTTATACGACTGAGGTCGATCGGTTGGTGAAGGGAGAAAAC

Coding sequence (CDS)

ATGATGGAGGGAGAAAACGGCAACGATCGATCGGGTGGTGGAGGGAGAAATCGGCGACGATGGTGGAAGGCTTATACGACTGAGGTCGATCGGTTGGTGAAGGGAGAAAAC

Protein sequence

MMEGENGNDRSGGGGRNRRRWWKAYTTEVDRLVKGEN
Homology
[Close]
BLAST of MELO3C028360 vs. NCBI nr
Match: KAA0058105.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 2.9e-11
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 1  MMEGENGNDRSGGGGRNRRRWWKAYTTEVDRLVKGEN 38
          MMEGENGNDRSGGGGRNRRRWWKAYT E+DRLV+GEN
Sbjct: 1  MMEGENGNDRSGGGGRNRRRWWKAYTAELDRLVEGEN 37

[Close]
BLAST of MELO3C028360 vs. ExPASy TrEMBL
Match: A0A5A7UWW1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004130 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 1  MMEGENGNDRSGGGGRNRRRWWKAYTTEVDRLVKGEN 38
          MMEGENGNDRSGGGGRNRRRWWKAYT E+DRLV+GEN
Sbjct: 1  MMEGENGNDRSGGGGRNRRRWWKAYTAELDRLVEGEN 37

The following BLAST results are available for this feature:
BLAST of MELO3C028360 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0058105.12.9e-1191.89LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C028360 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UWW11.4e-1191.89LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C028360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028360.1MELO3C028360.1mRNA