MELO3C028352 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028352
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	ATP-dependent Clp protease ATP-binding subunit ClpC
Location	chr05: 23745694 .. 23745863 (-)
RNA-Seq Expression	MELO3C028352
Synteny	MELO3C028352

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCTTGGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAACATATTAAAACCTGCCCTTGCAAGGGGTCAACTGCA

mRNA sequence

ACCTTGGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAACATATTAAAACCTGCCCTTGCAAGGGGTCAACTGCA

Coding sequence (CDS)

ATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAACATATTAAAACCTGCCCTTGCAAGGGGTCAACTG

Protein sequence

MGLLVAGTKYRGEFEERLKKLMEEIKQSDGAGAAEGAIDAANILKPALARGQL

Homology

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BLAST of MELO3C028352 vs. NCBI nr
Match: TYK21918.1 (Chaperone protein ClpC1 chloroplastic [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 5.0e-17
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDGAGAAEGAIDAANILKPALARGQL 54
           MGLLVAGTKYRGEFEER KKL+EEIKQSDGAGAA+GAIDAANILKP LARGQL
Sbjct: 134 MGLLVAGTKYRGEFEERFKKLIEEIKQSDGAGAAKGAIDAANILKPTLARGQL 186

[Close]

BLAST of MELO3C028352 vs. NCBI nr
Match: KAF5807089.1 (putative ClpA/B family, UVR domain, AAA+ ATPase domain, Clp ATPase [Helianthus annuus])

HSP 1 Score: 92.8 bits (229), Expect = 9.4e-16
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKPA
Sbjct: 106 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 165

[Close]

BLAST of MELO3C028352 vs. NCBI nr
Match: VAI29239.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 92.8 bits (229), Expect = 9.4e-16
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKPA
Sbjct: 306 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 365

[Close]

BLAST of MELO3C028352 vs. NCBI nr
Match: KAF5932772.1 (hypothetical protein HYC85_028943 [Camellia sinensis])

HSP 1 Score: 92.8 bits (229), Expect = 9.4e-16
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKPA
Sbjct: 374 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 433

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BLAST of MELO3C028352 vs. NCBI nr
Match: XP_009337515.1 (PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like [Pyrus x bretschneideri] >XP_009337516.1 PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 92.8 bits (229), Expect = 9.4e-16
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKPA
Sbjct: 335 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 394

[Close]

BLAST of MELO3C028352 vs. ExPASy Swiss-Prot
Match: P31541 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CD4A PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-18
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKPA
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 397

[Close]

BLAST of MELO3C028352 vs. ExPASy Swiss-Prot
Match: P31542 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CD4B PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-18
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKPA
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 395

[Close]

BLAST of MELO3C028352 vs. ExPASy Swiss-Prot
Match: Q2QVG9 (Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC2 PE=2 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-18
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKPA
Sbjct: 333 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 392

[Close]

BLAST of MELO3C028352 vs. ExPASy Swiss-Prot
Match: P35100 (Chaperone protein ClpC, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-18
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKPA
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAANILKPA 395

[Close]

BLAST of MELO3C028352 vs. ExPASy Swiss-Prot
Match: Q9FI56 (Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPC1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.8e-18
Identity = 51/66 (77.27%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAIDAANILKPA
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 397

[Close]

BLAST of MELO3C028352 vs. ExPASy TrEMBL
Match: A0A5D3DEP3 (Chaperone protein ClpC1 chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00600 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-17
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDGAGAAEGAIDAANILKPALARGQL 54
           MGLLVAGTKYRGEFEER KKL+EEIKQSDGAGAA+GAIDAANILKP LARGQL
Sbjct: 134 MGLLVAGTKYRGEFEERFKKLIEEIKQSDGAGAAKGAIDAANILKPTLARGQL 186

[Close]

BLAST of MELO3C028352 vs. ExPASy TrEMBL
Match: A0A1B6PCG3 (Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3008G081900 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.6e-16
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKPA
Sbjct: 335 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 394

[Close]

BLAST of MELO3C028352 vs. ExPASy TrEMBL
Match: K3Z3M1 (Uncharacterized protein OS=Setaria italica OX=4555 GN=101758343 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.6e-16
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKPA
Sbjct: 335 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 394

[Close]

BLAST of MELO3C028352 vs. ExPASy TrEMBL
Match: A0A1S3VVE4 (chaperone protein ClpC, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106778859 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.6e-16
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKPA
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 395

[Close]

BLAST of MELO3C028352 vs. ExPASy TrEMBL
Match: M5WCY0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G143300 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.6e-16
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKPA
Sbjct: 335 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 394

[Close]

BLAST of MELO3C028352 vs. TAIR 10
Match: AT3G48870.1 (Clp ATPase )

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-19
Identity = 51/66 (77.27%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAIDAANILKPA
Sbjct: 359 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 418

[Close]

BLAST of MELO3C028352 vs. TAIR 10
Match: AT3G48870.2 (Clp ATPase )

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-19
Identity = 51/66 (77.27%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAIDAANILKPA
Sbjct: 328 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 387

[Close]

BLAST of MELO3C028352 vs. TAIR 10
Match: AT5G50920.1 (CLPC homologue 1 )

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-19
Identity = 51/66 (77.27%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPA 54
           MGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAIDAANILKPA
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 397

[Close]

BLAST of MELO3C028352 vs. TAIR 10
Match: AT1G74310.1 (heat shock protein 101 )

HSP 1 Score: 67.4 bits (163), Expect = 4.0e-12
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD--------------GAGAAEGAIDAANILKP 54
           MG LVAG KYRGEFEERLK +++E++ ++              GAG  EG++DAAN+ KP
Sbjct: 243 MGALVAGAKYRGEFEERLKSVLKEVEDAEGKVILFIDEIHLVLGAGKTEGSMDAANLFKP 302

[Close]

BLAST of MELO3C028352 vs. TAIR 10
Match: AT5G15450.1 (casein lytic proteinase B3 )

HSP 1 Score: 64.3 bits (155), Expect = 3.3e-11
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD--------------GAGAAEGAIDAANILKP 54
           MG L+AG KYRGEFE+RLK +++E+  S+              GAGA  GA+DA N+LKP
Sbjct: 318 MGALIAGAKYRGEFEDRLKAVLKEVTDSEGQIILFIDEIHTVVGAGATNGAMDAGNLLKP 377

The following BLAST results are available for this feature:

BLAST of MELO3C028352 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21918.1	5.0e-17	92.45	Chaperone protein ClpC1 chloroplastic [Cucumis melo var. makuwa]	[more]
KAF5807089.1	9.4e-16	78.79	putative ClpA/B family, UVR domain, AAA+ ATPase domain, Clp ATPase [Helianthus a...	[more]
VAI29239.1	9.4e-16	78.79	unnamed protein product [Triticum turgidum subsp. durum]	[more]
KAF5932772.1	9.4e-16	78.79	hypothetical protein HYC85_028943 [Camellia sinensis]	[more]
XP_009337515.1	9.4e-16	78.79	PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chl...	[more]

BLAST of MELO3C028352 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31541	1.2e-18	78.79	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic ...	[more]
P31542	1.2e-18	78.79	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic ...	[more]
Q2QVG9	1.2e-18	78.79	Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
P35100	1.2e-18	78.79	Chaperone protein ClpC, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
Q9FI56	2.8e-18	77.27	Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPC1 ...	[more]

BLAST of MELO3C028352 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DEP3	2.4e-17	92.45	Chaperone protein ClpC1 chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1B6PCG3	4.6e-16	78.79	Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3008G081900 PE=3 SV=...	[more]
K3Z3M1	4.6e-16	78.79	Uncharacterized protein OS=Setaria italica OX=4555 GN=101758343 PE=3 SV=1	[more]
A0A1S3VVE4	4.6e-16	78.79	chaperone protein ClpC, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=L...	[more]
M5WCY0	4.6e-16	78.79	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G143300 PE=3 SV=1	[more]

BLAST of MELO3C028352 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48870.1	2.0e-19	77.27	Clp ATPase	[more]
AT3G48870.2	2.0e-19	77.27	Clp ATPase	[more]
AT5G50920.1	2.0e-19	77.27	CLPC homologue 1	[more]
AT1G74310.1	4.0e-12	52.24	heat shock protein 101	[more]
AT5G15450.1	3.3e-11	49.25	casein lytic proteinase B3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 11..31
None	No IPR available	PANTHER	PTHR11638:SF169	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC	coord: 1..53
None	No IPR available	PANTHER	PTHR11638	ATP-DEPENDENT CLP PROTEASE	coord: 1..53
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..53 e-value: 6.9E-11 score: 44.2
IPR018368	ClpA/B, conserved site 1	PROSITE	PS00870	CLPAB_1	coord: 39..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028352.1	MELO3C028352.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding