MELO3C028343 (gene) Melon (DHL92) v4

Overview
NameMELO3C028343
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon gag protein
Locationchr05: 22410922 .. 22411098 (-)
RNA-Seq ExpressionMELO3C028343
SyntenyMELO3C028343
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCATATTATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCCGTCGAGAAG

mRNA sequence

TATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCCGTCGAGAAG

Coding sequence (CDS)

ATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCCGTCGAGAA

Protein sequence

MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE
Homology
BLAST of MELO3C028343 vs. NCBI nr
Match: TYK04576.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 4.1e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 49
           MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE
Sbjct: 551 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 598

BLAST of MELO3C028343 vs. NCBI nr
Match: KAA0051981.1 (hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 4.1e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 49
           MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE
Sbjct: 147 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 194

BLAST of MELO3C028343 vs. NCBI nr
Match: TYK18585.1 (hypothetical protein E5676_scaffold119G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 49
           MLQPRRSSSQICCSQKDFCLKYIVAEKVV+SY+LQPRMSSSQICCRRE
Sbjct: 414 MLQPRRSSSQICCSQKDFCLKYIVAEKVVISYMLQPRMSSSQICCRRE 461

BLAST of MELO3C028343 vs. NCBI nr
Match: KAA0064215.1 (hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 49
           MLQPRRSSSQICCSQKDFCLKYIVAEKVV+SY+LQPRMSSSQICCRRE
Sbjct: 305 MLQPRRSSSQICCSQKDFCLKYIVAEKVVISYMLQPRMSSSQICCRRE 352

BLAST of MELO3C028343 vs. NCBI nr
Match: KAA0065301.1 (hypothetical protein E6C27_scaffold1023G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 49
           MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICC RE
Sbjct: 139 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCCRE 186

BLAST of MELO3C028343 vs. ExPASy TrEMBL
Match: A0A5D3C2C8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002110 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 49
           MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE
Sbjct: 551 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 598

BLAST of MELO3C028343 vs. ExPASy TrEMBL
Match: A0A5A7UEK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004640 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 49
           MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE
Sbjct: 147 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 194

BLAST of MELO3C028343 vs. ExPASy TrEMBL
Match: A0A5A7VE92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001630 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.8e-18
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 49
           MLQPRRSSSQICCSQKDFCLKYIVAEKVV+SY+LQPRMSSSQICCRRE
Sbjct: 305 MLQPRRSSSQICCSQKDFCLKYIVAEKVVISYMLQPRMSSSQICCRRE 352

BLAST of MELO3C028343 vs. ExPASy TrEMBL
Match: A0A5D3D4V9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001120 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.8e-18
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 49
           MLQPRRSSSQICCSQKDFCLKYIVAEKVV+SY+LQPRMSSSQICCRRE
Sbjct: 414 MLQPRRSSSQICCSQKDFCLKYIVAEKVVISYMLQPRMSSSQICCRRE 461

BLAST of MELO3C028343 vs. ExPASy TrEMBL
Match: A0A5A7T770 (Zinc finger Y-chromosomal protein 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G002020 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRE 49
           MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICC RE
Sbjct: 126 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCCRE 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK04576.14.1e-18100.00retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0051981.14.1e-18100.00hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa][more]
TYK18585.11.2e-1795.83hypothetical protein E5676_scaffold119G001120 [Cucumis melo var. makuwa][more]
KAA0064215.11.2e-1795.83hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa][more]
KAA0065301.13.5e-1797.92hypothetical protein E6C27_scaffold1023G00170 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C2C82.0e-18100.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7UEK92.0e-18100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VE925.8e-1895.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D4V95.8e-1895.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T7701.7e-1797.92Zinc finger Y-chromosomal protein 1-like isoform X1 OS=Cucumis melo var. makuwa ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028343.1MELO3C028343.1mRNA