MELO3C028341 (gene) Melon (DHL92) v4

Overview
NameMELO3C028341
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionNBS-LRR type resistance protein
Locationchr04: 18879712 .. 18879837 (+)
RNA-Seq ExpressionMELO3C028341
SyntenyMELO3C028341
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCACCCGGCGGCGATGGCTGAAATGGTTTGCCCGGTTTCTTTCGTCGACGATGGTAATACGACGGCTGACGCTGTACCACCGAGGCAGAAACGGCCGATGGCTGGCCGTGCACGCGGAACCGAGA

mRNA sequence

ACCACCCGGCGGCGATGGCTGAAATGGTTTGCCCGGTTTCTTTCGTCGACGATGGTAATACGACGGCTGACGCTGTACCACCGAGGCAGAAACGGCCGATGGCTGGCCGTGCACGCGGAACCGAGA

Coding sequence (CDS)

ATGGCTGAAATGGTTTGCCCGGTTTCTTTCGTCGACGATGGTAATACGACGGCTGACGCTGTACCACCGAGGCAGAAACGGCCGATGGCTGGCCGTGCACGCGGAACCGAG

Protein sequence

MAEMVCPVSFVDDGNTTADAVPPRQKRPMAGRARGTE
Homology
[Close]
BLAST of MELO3C028341 vs. NCBI nr
Match: KAA0067956.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 7.3e-07
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 4   MVCPVSFVDDGNTTADAVPPRQKRPMAGRARGTE 38
           M CPV++VD  NTTADAVPPRQKRPMAGRARGT+
Sbjct: 90  MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQ 123

[Close]
BLAST of MELO3C028341 vs. NCBI nr
Match: KAA0046516.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1  MAEMVCPVSFVDDGNTTADAVPPRQKRPMAGRARGTE 38
          MA+ VCPV++VD   TTADAV PRQ+RPMAGRARGT+
Sbjct: 1  MAKKVCPVTYVDARYTTADAVQPRQRRPMAGRARGTQ 37

[Close]
BLAST of MELO3C028341 vs. ExPASy TrEMBL
Match: A0A5A7VN13 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001400 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 4   MVCPVSFVDDGNTTADAVPPRQKRPMAGRARGTE 38
           M CPV++VD  NTTADAVPPRQKRPMAGRARGT+
Sbjct: 90  MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQ 123

[Close]
BLAST of MELO3C028341 vs. ExPASy TrEMBL
Match: A0A5A7TX05 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00150 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-05
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1  MAEMVCPVSFVDDGNTTADAVPPRQKRPMAGRARGTE 38
          MA+ VCPV++VD   TTADAV PRQ+RPMAGRARGT+
Sbjct: 1  MAKKVCPVTYVDARYTTADAVQPRQRRPMAGRARGTQ 37

The following BLAST results are available for this feature:
BLAST of MELO3C028341 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067956.17.3e-0782.35NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0046516.12.3e-0572.97gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C028341 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028341 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VN133.5e-0782.35NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7TX051.1e-0572.97Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G0015... [more]
BLAST of MELO3C028341 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028341.1MELO3C028341.1mRNA