MELO3C028330 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028330
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr03: 23192801 .. 23192971 (-)
RNA-Seq Expression	MELO3C028330
Synteny	MELO3C028330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGATGGAGCCAAATTAGTCCTGGCGGCTCGGCTGGAAGAAGACAGGACCGGCTCGGCTTGAGCAGACGCGGCTCGGCTCGGTACAGGAAGCTACGCGGGCGGCTCGGCTTGCAACAGGGAGGAGATGCGGCTCGGCTACGCGGGACGCGCGGCGCGGCTTCCCACGCGG

mRNA sequence

GTGGATGGAGCCAAATTAGTCCTGGCGGCTCGGCTGGAAGAAGACAGGACCGGCTCGGCTTGAGCAGACGCGGCTCGGCTCGGTACAGGAAGCTACGCGGGCGGCTCGGCTTGCAACAGGGAGGAGATGCGGCTCGGCTACGCGGGACGCGCGGCGCGGCTTCCCACGCGG

Coding sequence (CDS)

GGATGGAGCCAAATTAGTCCTGGCGGCTCGGCTGGAAGAAGACAGGACCGGCTCGGCTTGAGCAGACGCGGCTCGGCTCGGTACAGGAAGCTACGCGGGCGGCTCGGCTTGCAACAGGGAGGAGATGCGGCTCGGCTACGCGGGACGCGCGGCGCGGCTTCCCACGCG

Protein sequence

GWSQISPGGSAGRRQDRLGLSRRGSARYRKLRGRLGLQQGGDAARLRGTRGAASHA

Homology

[Close]

BLAST of MELO3C028330 vs. NCBI nr
Match: TYK07424.1 (hypothetical protein E5676_scaffold202G001510 [Cucumis melo var. makuwa] >TYK24310.1 hypothetical protein E5676_scaffold205G00810 [Cucumis melo var. makuwa] >TYK27535.1 hypothetical protein E5676_scaffold22G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 4.6e-05
Identity = 43/68 (63.24%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1   GWSQISPGGSAGRRQDRLGLSRRGSARYRKL-------RGRLGLQ-QGGDAARL-----R 55
           GWSQ SPGGSAGRRQDRLGL RRGSARYR         RGR G     GDAARL     R
Sbjct: 69  GWSQFSPGGSAGRRQDRLGLGRRGSARYRDFACGSACNRGRRGSACNRGDAARLHKSARR 128

[Close]

BLAST of MELO3C028330 vs. ExPASy TrEMBL
Match: A0A5D3DM11 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001510 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 43/68 (63.24%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1   GWSQISPGGSAGRRQDRLGLSRRGSARYRKL-------RGRLGLQ-QGGDAARL-----R 55
           GWSQ SPGGSAGRRQDRLGL RRGSARYR         RGR G     GDAARL     R
Sbjct: 69  GWSQFSPGGSAGRRQDRLGLGRRGSARYRDFACGSACNRGRRGSACNRGDAARLHKSARR 128

The following BLAST results are available for this feature:

BLAST of MELO3C028330 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07424.1	4.6e-05	63.24	hypothetical protein E5676_scaffold202G001510 [Cucumis melo var. makuwa] >TYK243...	[more]

BLAST of MELO3C028330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DM11	2.2e-05	63.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C028330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028330.1	MELO3C028330.1	mRNA