MELO3C028307 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028307
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Gag/pol protein
Location	chr09: 12181960 .. 12182989 (-)
RNA-Seq Expression	MELO3C028307
Synteny	MELO3C028307

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTATTGGTCATAAGTCTTTCGATCTTTGAGGCTCGTACTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACATTTTCCCAAGGTATAGGTCGGGAGGCGAGCTCGTTGAAGGGAGAACTGTGGTGTGACCCAAAAGCGTCCAAAAGATGGCCAATACTTCCAACGAGTGGCCAACGGTCGTTCGGAGTCAGAAACCACTGGAAATGCACTTCTAGTGAAGGAAACGGGCTGAGCTCTGGGACTTTCGGCGTTTGTCCTAAGAAAACGCGAGAGAGAATGCCCCGGACTAAGTTTTACCGTTTTGGGGCAAAAAGCGGTCCCCCGACGGTTTCTTCTCTTTGCTCCGTATTGGTCGTAAGTCTTTCGATCTTTGGGGCTCGTACTTTGAGGACTTCAACCCACACTCTTGGCATGCTCCCTGGCATGATTTCCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGGGAACTGTGGTGCGACCCAAAACGGTCCAAAAGATGACCAATGCTTCCAACGAGTGGCAAAAGCTCATCCGGTGTCAGAAACCATTGGAAATGCACTTGCAGCGAAACAAACAGGCTGAGGTCGAGGACTTTCGGTGTTCGTCCTAAGAAAACGTGAGAGAGAATGCTTCGGACTAAGTTTTACCGTCCTGGGGCAAAAAGCGATCCCCCGAGGGTTTCTTCTCTTTGCTCCGTACTGGTCATAAGTCTATCGATCTTTGGGGCTCGTACTCTGATGACTTTAAACCACACTCTTGGCATGCTCCCTGACACGTTTTCCTAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACTCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGTGAACACTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGGACTTTCGGTGTTCGTCCCAAACAAATGCGAGCGAGAATGTCCCGGACTCAGTTTTCCCGTCCTGGGACAAAA

mRNA sequence

CCTATTGGTCATAAGTCTTTCGATCTTTGAGGCTCGTACTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACATTTTCCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACTCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGTGAACACTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGGACTTTCGGTGTTCGTCCCAAACAAATGCGAGCGAGAATGTCCCGGACTCAGTTTTCCCGTCCTGGGACAAAA

Coding sequence (CDS)

ATGCTCCCTGACACATTTTCCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACTCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGTGAACACTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGGACTTTCGGTGTTCGTCCCAAACAAATGCGAGCGAGAATGTCCCGGACTCAGTTTTCCCGTCCTGGGACAAAA

Protein sequence

MLPDTFSQGIGREASSLEGELWCDSKRSKRWPMLPTSGEHSSGVRNHWKCTCSEGNGLSSRTFGVRPKQMRARMSRTQFSRPGTK

Homology

[Close]

BLAST of MELO3C028307 vs. NCBI nr
Match: KAA0026022.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 5.5e-34
Identity = 72/85 (84.71%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1  MLPDTFSQGIGREASSLEGELWCDSKRSKRWPMLPTSGEHSSGVRNHWKCTCSEGNGLSS 60
          MLPD FS GIGREA+SLEGELWCD KRSKRWPMLPTSGE SSG RNHWKCTCSEGNGLSS
Sbjct: 1  MLPDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTSGERSSGFRNHWKCTCSEGNGLSS 60

Query: 61 RTFGVRPKQMRARMSRTQFSRPGTK 86
          RT G RPK+ RA M RTQFSRPG K
Sbjct: 61 RTSGARPKKTRAGMPRTQFSRPGVK 85

[Close]

BLAST of MELO3C028307 vs. NCBI nr
Match: KAA0066117.1 (mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 72/83 (86.75%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MLPDTFSQGIGREASSLEGELWCDSKRSKRWPMLPTSGEHSSGVRNHWKCTCSEGNGLSS 60
           MLPDTFS GIGREASSLEGELWCD KRSKRWP LPTSGE SSGVRNHWKCTCSEGNGLSS
Sbjct: 179 MLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGLSS 238

Query: 61  RTFGVRPKQMRARMSRTQFSRPG 84
           RT G RPK+  A M RTQFSRPG
Sbjct: 239 RTSGARPKKTPAGMPRTQFSRPG 261

[Close]

BLAST of MELO3C028307 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 62/83 (74.70%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 3    PDTFSQGIGREASSLEGELWCDSKRSKRWPMLPTSGEHSSGVRNHWKCTCSEGNGLSSRT 62
            PD F   + REASSLE ELWCD KRSKRWPM PT+GE SSGVRNHWKCTCSEGNGL+SRT
Sbjct: 1467 PDVFFSLLRREASSLEEELWCDLKRSKRWPMFPTNGERSSGVRNHWKCTCSEGNGLNSRT 1526

Query: 63   FGVRPKQMRARMSRTQFSRPGTK 86
             G  PK+ RARM R+QFSR G K
Sbjct: 1527 SGASPKKTRARMPRSQFSRSGAK 1549

[Close]

BLAST of MELO3C028307 vs. NCBI nr
Match: KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 2.9e-27
Identity = 65/85 (76.47%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1   MLPDTFSQGIGREASSLEGELWCDSKRSKRWPMLPTSGEHSSGVRNHWKCTCSEGNGLSS 60
           MLP  F+QGIGREASSLEGELW D KR KRWPML TSGE  SGVRNHWKCTCS  N LSS
Sbjct: 46  MLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATSGERLSGVRNHWKCTCSGANRLSS 105

Query: 61  RTFGVRPKQMRARMSRTQFSRPGTK 86
           RT GV P + R RMSRTQFSRP  K
Sbjct: 106 RTSGVCPMKTRPRMSRTQFSRPRAK 130

[Close]

BLAST of MELO3C028307 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-26
Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 1   MLPDTFSQGIGREASSLEGELWCDSKRSKRWPMLPTSGEHSSGVRNHWKCTCSEGNGLSS 60
           MLPDTFSQGIG++ASSLEGE  CD K+SK WPMLPT  + SSGV+NHWKCTC E N LSS
Sbjct: 89  MLPDTFSQGIGQKASSLEGEPRCDPKQSKSWPMLPTYRKRSSGVKNHWKCTCREENRLSS 148

Query: 61  RTFGVRPKQMRARMSRTQFSRP 83
           RT  VRPK+ RARM RTQFSRP
Sbjct: 149 RTSSVRPKKTRARMPRTQFSRP 170

[Close]

BLAST of MELO3C028307 vs. ExPASy TrEMBL
Match: A0A5A7SLK2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29721G00010 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-34
Identity = 72/85 (84.71%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1  MLPDTFSQGIGREASSLEGELWCDSKRSKRWPMLPTSGEHSSGVRNHWKCTCSEGNGLSS 60
          MLPD FS GIGREA+SLEGELWCD KRSKRWPMLPTSGE SSG RNHWKCTCSEGNGLSS
Sbjct: 1  MLPDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTSGERSSGFRNHWKCTCSEGNGLSS 60

Query: 61 RTFGVRPKQMRARMSRTQFSRPGTK 86
          RT G RPK+ RA M RTQFSRPG K
Sbjct: 61 RTSGARPKKTRAGMPRTQFSRPGVK 85

[Close]

BLAST of MELO3C028307 vs. ExPASy TrEMBL
Match: A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.8e-34
Identity = 72/83 (86.75%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MLPDTFSQGIGREASSLEGELWCDSKRSKRWPMLPTSGEHSSGVRNHWKCTCSEGNGLSS 60
           MLPDTFS GIGREASSLEGELWCD KRSKRWP LPTSGE SSGVRNHWKCTCSEGNGLSS
Sbjct: 179 MLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGLSS 238

Query: 61  RTFGVRPKQMRARMSRTQFSRPG 84
           RT G RPK+  A M RTQFSRPG
Sbjct: 239 RTSGARPKKTPAGMPRTQFSRPG 261

[Close]

BLAST of MELO3C028307 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.4e-28
Identity = 62/83 (74.70%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 3    PDTFSQGIGREASSLEGELWCDSKRSKRWPMLPTSGEHSSGVRNHWKCTCSEGNGLSSRT 62
            PD F   + REASSLE ELWCD KRSKRWPM PT+GE SSGVRNHWKCTCSEGNGL+SRT
Sbjct: 1467 PDVFFSLLRREASSLEEELWCDLKRSKRWPMFPTNGERSSGVRNHWKCTCSEGNGLNSRT 1526

Query: 63   FGVRPKQMRARMSRTQFSRPGTK 86
             G  PK+ RARM R+QFSR G K
Sbjct: 1527 SGASPKKTRARMPRSQFSRSGAK 1549

[Close]

BLAST of MELO3C028307 vs. ExPASy TrEMBL
Match: A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 65/85 (76.47%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1   MLPDTFSQGIGREASSLEGELWCDSKRSKRWPMLPTSGEHSSGVRNHWKCTCSEGNGLSS 60
           MLP  F+QGIGREASSLEGELW D KR KRWPML TSGE  SGVRNHWKCTCS  N LSS
Sbjct: 46  MLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATSGERLSGVRNHWKCTCSGANRLSS 105

Query: 61  RTFGVRPKQMRARMSRTQFSRPGTK 86
           RT GV P + R RMSRTQFSRP  K
Sbjct: 106 RTSGVCPMKTRPRMSRTQFSRPRAK 130

[Close]

BLAST of MELO3C028307 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-26
Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 1   MLPDTFSQGIGREASSLEGELWCDSKRSKRWPMLPTSGEHSSGVRNHWKCTCSEGNGLSS 60
           MLPDTFSQGIG++ASSLEGE  CD K+SK WPMLPT  + SSGV+NHWKCTC E N LSS
Sbjct: 89  MLPDTFSQGIGQKASSLEGEPRCDPKQSKSWPMLPTYRKRSSGVKNHWKCTCREENRLSS 148

Query: 61  RTFGVRPKQMRARMSRTQFSRP 83
           RT  VRPK+ RARM RTQFSRP
Sbjct: 149 RTSSVRPKKTRARMPRTQFSRP 170

The following BLAST results are available for this feature:

BLAST of MELO3C028307 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0026022.1	5.5e-34	84.71	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0066117.1	1.6e-33	86.75	mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo v...	[more]
KAA0062888.1	1.3e-27	74.70	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
KAA0061317.1	2.9e-27	76.47	hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142...	[more]
KAA0035524.1	2.5e-26	75.61	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t...	[more]

BLAST of MELO3C028307 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028307 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLK2	2.7e-34	84.71	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7VGB1	7.8e-34	86.75	Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo...	[more]
A0A5A7V5J2	6.4e-28	74.70	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5A7V368	1.4e-27	76.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E5W4	1.2e-26	75.61	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C028307 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028307.1	MELO3C028307.1	mRNA