MELO3C028304 (gene) Melon (DHL92) v4

Overview
NameMELO3C028304
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionNBS-LRR type resistance protein
Locationchr02: 19081892 .. 19082085 (+)
RNA-Seq ExpressionMELO3C028304
SyntenyMELO3C028304
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGTTTTCCAAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGATCCAAAACAGTCCAAAAAATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCAGTGTCAAAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGTTGAGCTCGAGGACTTCTGGTGCTCGTCCCAAGAA

mRNA sequence

ACGTTTTCCAAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGATCCAAAACAGTCCAAAAAATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCAGTGTCAAAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGTTGAGCTCGAGGACTTCTGGTGCTCGTCCCAAGAA

Coding sequence (CDS)

ATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCAGTGTCAAAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGTTGAGCTCGAGGACTTCTGGTGCTCGTCCCAAGAA

Protein sequence

MANASNEWRTLVQCQKPLEMHLQRRKRVELEDFWCSSQE
Homology
BLAST of MELO3C028304 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0

Query: 1   MANASNEWRTLVQCQKPLEMHLQRRKRVELEDFWCSSQE 40
           MANASNEWR LV+CQKPLEMHLQRRKRVELEDF CSSQE
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQE 203

BLAST of MELO3C028304 vs. NCBI nr
Match: KAA0057641.1 (hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 6.7e-11
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 0

Query: 1  MANASNEWRTLVQCQKPLEMHLQRRKRVELEDFWCSSQE 40
          MANASNEW+TLV+CQKPLEM+LQRRK+ EL+DFWCSSQE
Sbjct: 1  MANASNEWQTLVRCQKPLEMYLQRRKQTELKDFWCSSQE 39

BLAST of MELO3C028304 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 9.7e-10
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 1  MANASNEWRTLVQCQKPLEMHLQRRKRVELEDFWCSSQE 40
          M +ASNEWRTLV+CQKPLEMHLQ+RKR ELEDFW  SQE
Sbjct: 1  MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQE 39

BLAST of MELO3C028304 vs. NCBI nr
Match: KAA0040927.1 (hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK10610.1 hypothetical protein E5676_scaffold315G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 2.8e-09
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 1   MANASNEWRTLVQCQKPLEMHLQRRKRVELEDFWCSSQE 40
           + NAS EWRTLV+CQKPL+MHLQ+RK  ELEDFWCSSQ+
Sbjct: 284 LGNASKEWRTLVRCQKPLKMHLQQRKWAELEDFWCSSQQ 322

BLAST of MELO3C028304 vs. NCBI nr
Match: KAA0062889.1 (uncharacterized protein E6C27_scaffold4427G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0

Query: 1  MANASNEWRTLVQCQKPLEMHLQRRKRVELEDFWCSSQE 40
          MANAS+ WRTLV+ QKPLEMHLQRRK  ELEDF CSS+E
Sbjct: 1  MANASDGWRTLVRFQKPLEMHLQRRKWAELEDFRCSSRE 39

BLAST of MELO3C028304 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0

Query: 1   MANASNEWRTLVQCQKPLEMHLQRRKRVELEDFWCSSQE 40
           MANASNEWR LV+CQKPLEMHLQRRKRVELEDF CSSQE
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQE 203

BLAST of MELO3C028304 vs. ExPASy TrEMBL
Match: A0A5A7UVV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00020 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 0

Query: 1  MANASNEWRTLVQCQKPLEMHLQRRKRVELEDFWCSSQE 40
          MANASNEW+TLV+CQKPLEM+LQRRK+ EL+DFWCSSQE
Sbjct: 1  MANASNEWQTLVRCQKPLEMYLQRRKQTELKDFWCSSQE 39

BLAST of MELO3C028304 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-10
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 1  MANASNEWRTLVQCQKPLEMHLQRRKRVELEDFWCSSQE 40
          M +ASNEWRTLV+CQKPLEMHLQ+RKR ELEDFW  SQE
Sbjct: 1  MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQE 39

BLAST of MELO3C028304 vs. ExPASy TrEMBL
Match: A0A5D3CGX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00560 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-09
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 1   MANASNEWRTLVQCQKPLEMHLQRRKRVELEDFWCSSQE 40
           + NAS EWRTLV+CQKPL+MHLQ+RK  ELEDFWCSSQ+
Sbjct: 284 LGNASKEWRTLVRCQKPLKMHLQQRKWAELEDFWCSSQQ 322

BLAST of MELO3C028304 vs. ExPASy TrEMBL
Match: A0A5A7VBA8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4427G00220 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0

Query: 1  MANASNEWRTLVQCQKPLEMHLQRRKRVELEDFWCSSQE 40
          MANAS+ WRTLV+ QKPLEMHLQRRK  ELEDF CSS+E
Sbjct: 1  MANASDGWRTLVRFQKPLEMHLQRRKWAELEDFRCSSRE 39

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK22521.13.9e-1192.31uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa][more]
KAA0057641.16.7e-1184.62hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa][more]
KAA0035524.19.7e-1082.05NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t... [more]
KAA0040927.12.8e-0976.92hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK1061... [more]
KAA0062889.12.6e-0779.49uncharacterized protein E6C27_scaffold4427G00220 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DFP21.9e-1192.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UVV03.3e-1184.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E5W44.7e-1082.05NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3CGX31.4e-0976.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VBA81.3e-0779.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028304.1MELO3C028304.1mRNA