MELO3C028297 (gene) Melon (DHL92) v4

Overview
NameMELO3C028297
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTy3-gypsy retrotransposon protein
Locationchr06: 10808746 .. 10809449 (+)
RNA-Seq ExpressionMELO3C028297
SyntenyMELO3C028297
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCTGTCGAGAAGGTCGTTCCTTCAATTATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGCAGCTGAGAAGATCATCGCCTCAAATATGTTACAACTGAGAAGATTGTCGTCTCAAATATGTTGCAGCTAAAAAGATTTTTGTCTCAAGTACATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAGCCGAGGATGTCGTCGTCGCTAATATGTCGCCGCCGAGAAGGTTGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTCGTTCTTAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGCAGCTGAGAAGATCGTCGTCTCAAATATGTTACAACCAAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAATGTCGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCCACCGAGGAGGTCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGCAGCTGAGAAGATCGTCGTCTCAAATATGTTACAACCGAGAAGATCGTCGTCT

mRNA sequence

TATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGAGGTCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGCAGCTGAGAAGATCGTCGTCTCAAATATGTTACAACCGAGAAGATCGTCGTCT

Coding sequence (CDS)

ATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGAGGTCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGCAGCTGAGAAGATCGTCGTCTCAAATATGTTACAACCGAGAAGATCGTCGT

Protein sequence

MLQPKRFLSQVYCSRESRRLIYIAAEEVVPSNMLQLRRLSFLNMLQLRRSSSQICYNREDRR
Homology
BLAST of MELO3C028297 vs. NCBI nr
Match: TYK18585.1 (hypothetical protein E5676_scaffold119G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-13
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 1   MLQPKRFLSQVYCSRESRRLIYIAAEEVVPSNMLQLRRLSFLNMLQLRRSSSQICYNRED 60
           MLQP++  S +YCSR  RRL Y+AAE+VVPSNMLQLRRL FLNMLQ RRSSSQIC +++D
Sbjct: 264 MLQPRKSSSHIYCSRGCRRLKYVAAEKVVPSNMLQLRRLPFLNMLQQRRSSSQICCSQKD 323

BLAST of MELO3C028297 vs. NCBI nr
Match: KAA0064215.1 (hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-13
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 1   MLQPKRFLSQVYCSRESRRLIYIAAEEVVPSNMLQLRRLSFLNMLQLRRSSSQICYNRED 60
           MLQP++  S +YCSR  RRL Y+AAE+VVPSNMLQLRRL FLNMLQ RRSSSQIC +++D
Sbjct: 155 MLQPRKSSSHIYCSRGCRRLKYVAAEKVVPSNMLQLRRLPFLNMLQQRRSSSQICCSQKD 214

BLAST of MELO3C028297 vs. NCBI nr
Match: KAA0065418.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-10
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 1   MLQPKRFLSQVYCSRESRRLIYIAAEEVVPSNMLQLRRLSFLNMLQLRRSSSQICYNRED 60
           MLQ ++  S + CSR  R L YI AE+VVPSNMLQLRR  FLNMLQ RRSSSQIC ++E 
Sbjct: 667 MLQSRKSSSHICCSRGCRHLKYIVAEKVVPSNMLQLRRSLFLNMLQQRRSSSQICCSQEC 726

Query: 61  RR 63
           RR
Sbjct: 727 RR 728

BLAST of MELO3C028297 vs. NCBI nr
Match: KAA0025375.1 (zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 5.0e-08
Identity = 38/55 (69.09%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 1   MLQPKRFLSQVYCSRESRRLIYIAAEEVVPSNMLQLRRLSFLNMLQLRRSSSQIC 56
           MLQPKRFLSQVYCSRESRRLIY+AAE+VV S           NML  RRSS QIC
Sbjct: 208 MLQPKRFLSQVYCSRESRRLIYVAAEDVVIS-----------NMLSSRRSSPQIC 251

BLAST of MELO3C028297 vs. NCBI nr
Match: KAA0032176.1 (hypothetical protein E6C27_scaffold452G00990 [Cucumis melo var. makuwa] >TYK14421.1 hypothetical protein E5676_scaffold186G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 5.5e-07
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 1   MLQPKRFLSQVYCSRESRRLIYIAAEEVVPSNMLQLRRLSFLNMLQ 47
           MLQP++  S + CSR  RRL Y+ AE+VVPSNMLQLRR SFLNMLQ
Sbjct: 263 MLQPRKSSSHICCSRGCRRLTYVVAEKVVPSNMLQLRRSSFLNMLQ 308

BLAST of MELO3C028297 vs. ExPASy TrEMBL
Match: A0A5A7VE92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001630 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 1   MLQPKRFLSQVYCSRESRRLIYIAAEEVVPSNMLQLRRLSFLNMLQLRRSSSQICYNRED 60
           MLQP++  S +YCSR  RRL Y+AAE+VVPSNMLQLRRL FLNMLQ RRSSSQIC +++D
Sbjct: 155 MLQPRKSSSHIYCSRGCRRLKYVAAEKVVPSNMLQLRRLPFLNMLQQRRSSSQICCSQKD 214

BLAST of MELO3C028297 vs. ExPASy TrEMBL
Match: A0A5D3D4V9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001120 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 1   MLQPKRFLSQVYCSRESRRLIYIAAEEVVPSNMLQLRRLSFLNMLQLRRSSSQICYNRED 60
           MLQP++  S +YCSR  RRL Y+AAE+VVPSNMLQLRRL FLNMLQ RRSSSQIC +++D
Sbjct: 264 MLQPRKSSSHIYCSRGCRRLKYVAAEKVVPSNMLQLRRLPFLNMLQQRRSSSQICCSQKD 323

BLAST of MELO3C028297 vs. ExPASy TrEMBL
Match: A0A5A7VCR0 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00910 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.6e-10
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 1   MLQPKRFLSQVYCSRESRRLIYIAAEEVVPSNMLQLRRLSFLNMLQLRRSSSQICYNRED 60
           MLQ ++  S + CSR  R L YI AE+VVPSNMLQLRR  FLNMLQ RRSSSQIC ++E 
Sbjct: 667 MLQSRKSSSHICCSRGCRHLKYIVAEKVVPSNMLQLRRSLFLNMLQQRRSSSQICCSQEC 726

Query: 61  RR 63
           RR
Sbjct: 727 RR 728

BLAST of MELO3C028297 vs. ExPASy TrEMBL
Match: A0A5A7SLN4 (Zinc finger Y-chromosomal protein 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00010 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-08
Identity = 38/55 (69.09%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 1   MLQPKRFLSQVYCSRESRRLIYIAAEEVVPSNMLQLRRLSFLNMLQLRRSSSQIC 56
           MLQPKRFLSQVYCSRESRRLIY+AAE+VV S           NML  RRSS QIC
Sbjct: 208 MLQPKRFLSQVYCSRESRRLIYVAAEDVVIS-----------NMLSSRRSSPQIC 251

BLAST of MELO3C028297 vs. ExPASy TrEMBL
Match: A0A5A7SQ83 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00740 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 1   MLQPKRFLSQVYCSRESRRLIYIAAEEVVPSNMLQLRRLSFLNMLQ 47
           MLQP++  S + CSR  RRL Y+ AE+VVPSNMLQLRR SFLNMLQ
Sbjct: 263 MLQPRKSSSHICCSRGCRRLTYVVAEKVVPSNMLQLRRSSFLNMLQ 308

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK18585.12.3e-1371.67hypothetical protein E5676_scaffold119G001120 [Cucumis melo var. makuwa][more]
KAA0064215.12.3e-1371.67hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa][more]
KAA0065418.15.3e-1066.13retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0025375.15.0e-0869.09zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa][more]
KAA0032176.15.5e-0769.57hypothetical protein E6C27_scaffold452G00990 [Cucumis melo var. makuwa] >TYK1442... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VE921.1e-1371.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D4V91.1e-1371.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VCR02.6e-1066.13Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7SLN42.4e-0869.09Zinc finger Y-chromosomal protein 1-like isoform X1 OS=Cucumis melo var. makuwa ... [more]
A0A5A7SQ832.7e-0769.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028297.1MELO3C028297.1mRNA