MELO3C028196 (gene) Melon (DHL92) v4

Overview
NameMELO3C028196
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr03: 17132894 .. 17133068 (+)
RNA-Seq ExpressionMELO3C028196
SyntenyMELO3C028196
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACGAAGCCGTGGGTAGCCGGACCACCAGCAGCCGCCGCGCCACCCGAAATCCGGAAGCCAGCGCCTCGCGCACAAGGATCCGACCGAAAACCCGCCCCGCGACCCGAACCGACGCGCGCCATCTTCCGGAACCCGACCCGCGCCCGCGTGCGTCCTCGTGTGAGCCGCGCCGCG

mRNA sequence

AACGAAGCCGTGGGTAGCCGGACCACCAGCAGCCGCCGCGCCACCCGAAATCCGGAAGCCAGCGCCTCGCGCACAAGGATCCGACCGAAAACCCGCCCCGCGACCCGAACCGACGCGCGCCATCTTCCGGAACCCGACCCGCGCCCGCGTGCGTCCTCGTGTGAGCCGCGCCGCG

Coding sequence (CDS)

AACGAAGCCGTGGGTAGCCGGACCACCAGCAGCCGCCGCGCCACCCGAAATCCGGAAGCCAGCGCCTCGCGCACAAGGATCCGACCGAAAACCCGCCCCGCGACCCGAACCGACGCGCGCCATCTTCCGGAACCCGACCCGCGCCCGCGTGCGTCCTCGTGTGAGCCGCGCCGC

Protein sequence

NEAVGSRTTSSRRATRNPEASASRTRIRPKTRPATRTDARHLPEPDPRPRASSCEPRR
Homology
[Close]
BLAST of MELO3C028196 vs. NCBI nr
Match: KAA0047850.1 (hypothetical protein E6C27_scaffold133G001150 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 5   GSRTTSSRRATRNPEASASRTRIRPKTRPATRTDARHLPEPDPRPRASSCEP 57
           GSRTTSSRRATRNPEA+ASR RIRPKTR  TRTDARHLPEPDPRPR S+CEP
Sbjct: 90  GSRTTSSRRATRNPEANASRARIRPKTRSMTRTDARHLPEPDPRPRVSACEP 141

[Close]
BLAST of MELO3C028196 vs. NCBI nr
Match: KAA0046136.1 (hypothetical protein E6C27_scaffold157G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 5   GSRTTSSRRATRNPEASASRTRIRPKTRPATRTDARHLPEPDPRPRASSCEPR 58
           GSRTTSSRRATRNPEA A R +I PKTR ATRT ARHLPEPDPRPRAS+CEPR
Sbjct: 145 GSRTTSSRRATRNPEADAPRVKISPKTRSATRTGARHLPEPDPRPRASACEPR 197

[Close]
BLAST of MELO3C028196 vs. ExPASy TrEMBL
Match: A0A5A7TXE3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001150 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.1e-14
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 5   GSRTTSSRRATRNPEASASRTRIRPKTRPATRTDARHLPEPDPRPRASSCEP 57
           GSRTTSSRRATRNPEA+ASR RIRPKTR  TRTDARHLPEPDPRPR S+CEP
Sbjct: 90  GSRTTSSRRATRNPEANASRARIRPKTRSMTRTDARHLPEPDPRPRVSACEP 141

[Close]
BLAST of MELO3C028196 vs. ExPASy TrEMBL
Match: A0A5A7TVG1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00760 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.8e-13
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 5   GSRTTSSRRATRNPEASASRTRIRPKTRPATRTDARHLPEPDPRPRASSCEPR 58
           GSRTTSSRRATRNPEA A R +I PKTR ATRT ARHLPEPDPRPRAS+CEPR
Sbjct: 145 GSRTTSSRRATRNPEADAPRVKISPKTRSATRTGARHLPEPDPRPRASACEPR 197

The following BLAST results are available for this feature:
BLAST of MELO3C028196 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047850.11.3e-1388.46hypothetical protein E6C27_scaffold133G001150 [Cucumis melo var. makuwa][more]
KAA0046136.11.4e-1284.91hypothetical protein E6C27_scaffold157G00760 [Cucumis melo var. makuwa][more]
BLAST of MELO3C028196 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028196 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TXE36.1e-1488.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TVG16.8e-1384.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C028196 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028196.1MELO3C028196.1mRNA