MELO3C028164 (gene) Melon (DHL92) v4

Overview
NameMELO3C028164
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionNAC-alpha domain-containing protein 1
Locationchr04: 26209498 .. 26209811 (+)
RNA-Seq ExpressionMELO3C028164
SyntenyMELO3C028164
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCGGATCTCCACAGCCGCCGCAACCTTGAGTTTTCCGCCAGCCGTCAGTCCGAGCGAAAGCTTGCAAGCAGCCGCATCCCGTTCTCTTCGTCGTCGTCCGTCGGGTCCCAGCTGACGCCGCCACCGTGAGGTTCGCCGGTTGCTGCAGCCCCCATCGTACCGCCGTCGTTCGCCGGAAGAAAGAACCATCAAAACCGTGGCTGCCCGTTTTCATCCAATCCGACCCGAGACCCGCTTCCAGTCCGAGCCGTGAGCCACAAACGAATCCGAGTGAGCCGAGTGAGCCGAGCCGAGTGAGCCGCGTGAGCCGAG

mRNA sequence

CGCCGGATCTCCACAGCCGCCGCAACCTTGAGTTTTCCGCCAGCCGTCAGTCCGAGCGAAAGCTTGCAAGCAGCCGCATCCCGTTCTCTTCGTCGTCGTCCGTCGGGTCCCAGCTGACGCCGCCACCGTGAGGTTCGCCGGTTGCTGCAGCCCCCATCGTACCGCCGTCGTTCGCCGGAAGAAAGAACCATCAAAACCGTGGCTGCCCGTTTTCATCCAATCCGACCCGAGACCCGCTTCCAGTCCGAGCCGTGAGCCACAAACGAATCCGAGTGAGCCGAGTGAGCCGAGCCGAGTGAGCCGCGTGAGCCGAG

Coding sequence (CDS)

GTTTTCCGCCAGCCGTCAGTCCGAGCGAAAGCTTGCAAGCAGCCGCATCCCGTTCTCTTCGTCGTCGTCCGTCGGGTCCCAGCTGACGCCGCCACCGTGAGGTTCGCCGGTTGCTGCAGCCCCCATCGTACCGCCGTCGTTCGCCGGAAGAAAGAACCATCAAAACCGTGGCTGCCCGTTTTCATCCAATCCGACCCGAGACCCGCTTCCAGTCCGAGCCGTGAGCCACAAACGAATCCGAGTGAGCCGAGTGAGCCGAGCCGAGTGAGCCGCGTGAGCCGA

Protein sequence

VFRQPSVRAKACKQPHPVLFVVVRRVPADAATVRFAGCCSPHRTAVVRRKKEPSKPWLPVFIQSDPRPASSPSREPQTNPSEPSEPSRVSRVSR
Homology
[Close]
BLAST of MELO3C028164 vs. NCBI nr
Match: KAA0059163.1 (NAC-alpha domain-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-27
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 10 KACKQPHPVLFVVVRRVPADAATVRFAGCCSPHRTAVVRRKKEPSKPWLPVFIQSDPRPA 69
          +ACKQPHPVLFVVVRRVPADAATVRFAGCCSPHRTAVVRRKKEPSKPWLPVFIQSDPRPA
Sbjct: 23 RACKQPHPVLFVVVRRVPADAATVRFAGCCSPHRTAVVRRKKEPSKPWLPVFIQSDPRPA 82

Query: 70 SSPSREPQ 78
          S PSR  +
Sbjct: 83 SRPSRSKE 90

[Close]
BLAST of MELO3C028164 vs. ExPASy TrEMBL
Match: A0A5A7UTA9 (NAC-alpha domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00810 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 9.2e-28
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 10 KACKQPHPVLFVVVRRVPADAATVRFAGCCSPHRTAVVRRKKEPSKPWLPVFIQSDPRPA 69
          +ACKQPHPVLFVVVRRVPADAATVRFAGCCSPHRTAVVRRKKEPSKPWLPVFIQSDPRPA
Sbjct: 23 RACKQPHPVLFVVVRRVPADAATVRFAGCCSPHRTAVVRRKKEPSKPWLPVFIQSDPRPA 82

Query: 70 SSPSREPQ 78
          S PSR  +
Sbjct: 83 SRPSRSKE 90

The following BLAST results are available for this feature:
BLAST of MELO3C028164 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0059163.11.9e-2792.65NAC-alpha domain-containing protein 1 [Cucumis melo var. makuwa][more]
BLAST of MELO3C028164 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028164 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UTA99.2e-2892.65NAC-alpha domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
BLAST of MELO3C028164 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028164.1MELO3C028164.1mRNA