MELO3C028155 (gene) Melon (DHL92) v4

Overview
NameMELO3C028155
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionFloral homeotic protein DEFICIENS-like
Locationchr12: 19801869 .. 19802018 (-)
RNA-Seq ExpressionMELO3C028155
SyntenyMELO3C028155
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGAGATAGCGAAGAAAAGGATCGAGATAGAGACAGAGTGTTATAATGTTGAGGAGGGAACGTCAGTGGAGAGTAGCCAAACCCTAAATGCAAACATGAAGCATAAACAAGTAATGGGATTTGATCCTGAAGAGGAAAGAGAATGGTGA

mRNA sequence

ATCGAGATAGCGAAGAAAAGGATCGAGATAGAGACAGAGTGTTATAATGTTGAGGAGGGAACGTCAGTGGAGAGTAGCCAAACCCTAAATGCAAACATGAAGCATAAACAAGTAATGGGATTTGATCCTGAAGAGGAAAGAGAATGGTGA

Coding sequence (CDS)

ATCGAGATAGCGAAGAAAAGGATCGAGATAGAGACAGAGTGTTATAATGTTGAGGAGGGAACGTCAGTGGAGAGTAGCCAAACCCTAAATGCAAACATGAAGCATAAACAAGTAATGGGATTTGATCCTGAAGAGGAAAGAGAATGGTGA

Protein sequence

IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEEREW
Homology
BLAST of MELO3C028155 vs. NCBI nr
Match: XP_008460878.1 (PREDICTED: MADS-box protein SOC1-like [Cucumis melo] >KAA0040750.1 MADS-box protein SOC1-like [Cucumis melo var. makuwa] >TYK02066.1 MADS-box protein SOC1-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0

Query: 1   IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 47
           IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE
Sbjct: 146 IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 191

BLAST of MELO3C028155 vs. NCBI nr
Match: KAE8651989.1 (hypothetical protein Csa_016959 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 1   IEIAKKRIEIETE-CYNVEEGTSVESS-QTLNANMKHKQVMGFDPEEE-REW 50
           IEIAKKRIEI TE  YNVEEGTSVESS QTLNANMK KQVMGFD EEE  +W
Sbjct: 146 IEIAKKRIEIATENNYNVEEGTSVESSGQTLNANMKCKQVMGFDHEEESHQW 197

BLAST of MELO3C028155 vs. NCBI nr
Match: XP_011650173.1 (floral homeotic protein DEFICIENS [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 42/48 (87.50%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 1   IEIAKKRIEIETE-CYNVEEGTSVESS-QTLNANMKHKQVMGFDPEEE 47
           IEIAKKRIEI TE  YNVEEGTSVESS QTLNANMK KQVMGFD EEE
Sbjct: 146 IEIAKKRIEIATENNYNVEEGTSVESSGQTLNANMKCKQVMGFDHEEE 193

BLAST of MELO3C028155 vs. NCBI nr
Match: KAA0031559.1 (floral homeotic protein DEFICIENS-like [Cucumis melo var. makuwa] >KAA0034180.1 floral homeotic protein DEFICIENS-like [Cucumis melo var. makuwa] >TYK20695.1 floral homeotic protein DEFICIENS-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.3e-07
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 16 NVEEGTSVESSQTLNANMKHKQVMGFDPEEEREW 50
          N  EGTSVESSQTLNANMKHKQVMGFDPEEER W
Sbjct: 32 NFWEGTSVESSQTLNANMKHKQVMGFDPEEERGW 65

BLAST of MELO3C028155 vs. NCBI nr
Match: TYK15129.1 (hydroxyphenylpyruvate reductase-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.3e-07
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 16  NVEEGTSVESSQTLNANMKHKQVMGFDPEEEREW 50
           N  EGTSVESSQTLNANMKHKQVMGFDPEEER W
Sbjct: 128 NFWEGTSVESSQTLNANMKHKQVMGFDPEEERGW 161

BLAST of MELO3C028155 vs. ExPASy TrEMBL
Match: A0A5D3BUZ8 (MADS-box protein SOC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00490 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.5e-16
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0

Query: 1   IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 47
           IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE
Sbjct: 146 IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 191

BLAST of MELO3C028155 vs. ExPASy TrEMBL
Match: A0A1S3CDG6 (MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.5e-16
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0

Query: 1   IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 47
           IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE
Sbjct: 146 IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 191

BLAST of MELO3C028155 vs. ExPASy TrEMBL
Match: A0A0A0LME6 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.5e-09
Identity = 42/48 (87.50%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 1   IEIAKKRIEIETE-CYNVEEGTSVESS-QTLNANMKHKQVMGFDPEEE 47
           IEIAKKRIEI TE  YNVEEGTSVESS QTLNANMK KQVMGFD EEE
Sbjct: 146 IEIAKKRIEIATENNYNVEEGTSVESSGQTLNANMKCKQVMGFDHEEE 193

BLAST of MELO3C028155 vs. ExPASy TrEMBL
Match: A0A5A7SQH5 (Floral homeotic protein DEFICIENS-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00890 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 16 NVEEGTSVESSQTLNANMKHKQVMGFDPEEEREW 50
          N  EGTSVESSQTLNANMKHKQVMGFDPEEER W
Sbjct: 32 NFWEGTSVESSQTLNANMKHKQVMGFDPEEERGW 65

BLAST of MELO3C028155 vs. ExPASy TrEMBL
Match: A0A5D3CY83 (Hydroxyphenylpyruvate reductase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00640 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 16  NVEEGTSVESSQTLNANMKHKQVMGFDPEEEREW 50
           N  EGTSVESSQTLNANMKHKQVMGFDPEEER W
Sbjct: 128 NFWEGTSVESSQTLNANMKHKQVMGFDPEEERGW 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_008460878.11.1e-15100.00PREDICTED: MADS-box protein SOC1-like [Cucumis melo] >KAA0040750.1 MADS-box prot... [more]
KAE8651989.11.3e-0882.69hypothetical protein Csa_016959 [Cucumis sativus][more]
XP_011650173.11.8e-0887.50floral homeotic protein DEFICIENS [Cucumis sativus][more]
KAA0031559.13.3e-0791.18floral homeotic protein DEFICIENS-like [Cucumis melo var. makuwa] >KAA0034180.1 ... [more]
TYK15129.13.3e-0791.18hydroxyphenylpyruvate reductase-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3BUZ85.5e-16100.00MADS-box protein SOC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A1S3CDG65.5e-16100.00MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1[more]
A0A0A0LME68.5e-0987.50MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE... [more]
A0A5A7SQH51.6e-0791.18Floral homeotic protein DEFICIENS-like OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A5D3CY831.6e-0791.18Hydroxyphenylpyruvate reductase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028155.1MELO3C028155.1mRNA