MELO3C028145 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028145
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	chr03: 3592135 .. 3592335 (-)
RNA-Seq Expression	MELO3C028145
Synteny	MELO3C028145

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATTCATTTGCTGAAACCAGAAGTCAAAATTTTGGTAGATAGGGATTCGATAAAAACTTCTTTCGAGGACTGGGCTAGATCGAGTCATTTCTCAAGAACAATAGCTAAGGGTTCTGATACTACCACTTGGATCTAGAACCTTCATGCTTACGATTTCGATAGCTATACTGGTGACTTGGAGGGGATCTCTCAAAAA

mRNA sequence

ATGATTATTCATTTGCTGAAACCAGAAGTCAAAATTTTGGTAGATAGGGATTCGATAAAAACTTCTTTCGAGGACTGGGCTAGATCGAGTCATTTCTCAAGAACAATAGCTAAGGGTTCTGATACTACCACTTGGATCTAGAACCTTCATGCTTACGATTTCGATAGCTATACTGGTGACTTGGAGGGGATCTCTCAAAAA

Coding sequence (CDS)

ATGATTATTCATTTGCTGAAACCAGAAGTCAAAATTTTGGTAGATAGGGATTCGATAAAAACTTCTTTCGAGGACTGGGCTAGATCGAGTCATTTCTCAAGAACAATAGCTAAGGGTTCTGATACTACCACTTGGATCTAG

Protein sequence

MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI

Homology

[Close]

BLAST of MELO3C028145 vs. NCBI nr
Match: KAF3637895.1 (Photosystem I chlorophyll a apoprotein A2 [Capsicum annuum] >KAF3673152.1 Photosystem I chlorophyll a apoprotein A2 [Capsicum annuum])

HSP 1 Score: 80.9 bits (198), Expect = 3.2e-12
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MII  LKPEVKILVDRD +KTSFE+WAR+ HFSRTIAKG DTTTWI
Sbjct: 1  MIIRSLKPEVKILVDRDPVKTSFEEWARAGHFSRTIAKGLDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. NCBI nr
Match: ANS11019.1 (photosystem I P700 chlorophyll a [Euphronia guianensis])

HSP 1 Score: 79.7 bits (195), Expect = 7.2e-12
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MIIH  +PEVKILVDRD IKTSFE+WAR  HFSRTIAKG DTTTWI
Sbjct: 1  MIIHSPEPEVKILVDRDPIKTSFEEWARPGHFSRTIAKGPDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. NCBI nr
Match: RZC56630.1 (hypothetical protein C5167_015500 [Papaver somniferum])

HSP 1 Score: 79.3 bits (194), Expect = 9.4e-12
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MIIH  KPEVKILVDRD +KTSFE+WA+  HFSRTIAKG DTTTWI
Sbjct: 1  MIIHSPKPEVKILVDRDPVKTSFEEWAKLGHFSRTIAKGPDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. NCBI nr
Match: PPD91646.1 (hypothetical protein GOBAR_DD11401 [Gossypium barbadense])

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MIIH  +PEVKILVDRD +KTSFE+WAR SHFSRTIAKG +TTTWI
Sbjct: 1  MIIHSPEPEVKILVDRDPVKTSFEEWARPSHFSRTIAKGPNTTTWI 46

[Close]

BLAST of MELO3C028145 vs. NCBI nr
Match: TYJ15395.1 (hypothetical protein E1A91_A10G181100v1 [Gossypium mustelinum])

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MIIHL +PEVKILVDRD +KTSFE+WAR  HFSRTIAK  DTTTWI
Sbjct: 1  MIIHLPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKRPDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. ExPASy Swiss-Prot
Match: Q2QD89 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psaA PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-14
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MII   +PEVKILVDRD IKTSFEDWAR  HFSRTIAKG DTTTWI
Sbjct: 1  MIIRSPEPEVKILVDRDPIKTSFEDWARPGHFSRTIAKGPDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. ExPASy Swiss-Prot
Match: Q06FW5 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Pelargonium hortorum OX=4031 GN=psaA PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.1e-14
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MII   +PEVKILVDRD IKTSFE+WAR  HFSRTIAKG DTTTWI
Sbjct: 1  MIIRSSEPEVKILVDRDPIKTSFEEWARPGHFSRTIAKGPDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. ExPASy Swiss-Prot
Match: Q06RD1 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Jasminum nudiflorum OX=126431 GN=psaA PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.0e-14
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MII   +PEVKILVDRD IKTSFE+WAR  HFSRTIAKG DTTTWI
Sbjct: 1  MIIRSPEPEVKILVDRDHIKTSFEEWARPGHFSRTIAKGPDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. ExPASy Swiss-Prot
Match: Q14FF7 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Populus alba OX=43335 GN=psaA PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.0e-14
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MII   +PEVKILVDRD IKTSFE+WAR  HFSRTIAKG DTTTWI
Sbjct: 1  MIIRSPEPEVKILVDRDPIKTSFEEWARPGHFSRTIAKGPDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. ExPASy Swiss-Prot
Match: A4GYR0 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Populus trichocarpa OX=3694 GN=psaA PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.0e-14
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MII   +PEVKILVDRD IKTSFE+WAR  HFSRTIAKG DTTTWI
Sbjct: 1  MIIRSPEPEVKILVDRDPIKTSFEEWARPGHFSRTIAKGPDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. ExPASy TrEMBL
Match: A0A1C8QF53 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Euphronia guianensis OX=82261 GN=psaA PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-12
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MIIH  +PEVKILVDRD IKTSFE+WAR  HFSRTIAKG DTTTWI
Sbjct: 1  MIIHSPEPEVKILVDRDPIKTSFEEWARPGHFSRTIAKGPDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. ExPASy TrEMBL
Match: A0A4Y7J9A2 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_015500 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.5e-12
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MIIH  KPEVKILVDRD +KTSFE+WA+  HFSRTIAKG DTTTWI
Sbjct: 1  MIIHSPKPEVKILVDRDPVKTSFEEWAKLGHFSRTIAKGPDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. ExPASy TrEMBL
Match: A0A7M3UZV1 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Elaeocarpus japonicus OX=1008907 GN=psaA PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-12
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MII   +PEVKILVDRDSIKTSFE+WAR  HFSRTIAKG DTTTWI
Sbjct: 1  MIIRSPEPEVKILVDRDSIKTSFEEWARPGHFSRTIAKGPDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. ExPASy TrEMBL
Match: A0A7S8WTN0 (Photosystem I P700 apoprotein A1 OS=Elaeocarpus braceanus OX=1045333 GN=psaA PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-12
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MII   +PEVKILVDRDSIKTSFE+WAR  HFSRTIAKG DTTTWI
Sbjct: 1  MIIRSPEPEVKILVDRDSIKTSFEEWARPGHFSRTIAKGPDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. ExPASy TrEMBL
Match: A0A5D2XMZ9 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A10G181100v1 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-12
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MIIHL +PEVKILVDRD +KTSFE+WAR  HFSRTIAK  DTTTWI
Sbjct: 1  MIIHLPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKRPDTTTWI 46

[Close]

BLAST of MELO3C028145 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-14
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1  MIIHLLKPEVKILVDRDSIKTSFEDWARSSHFSRTIAKGSDTTTWI 47
          MII   +PEVKILVDRD IKTSFE+WA+  HFSRTIAKG DTTTWI
Sbjct: 1  MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWI 46

The following BLAST results are available for this feature:

BLAST of MELO3C028145 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3637895.1	3.2e-12	82.61	Photosystem I chlorophyll a apoprotein A2 [Capsicum annuum] >KAF3673152.1 Photos...	[more]
ANS11019.1	7.2e-12	82.61	photosystem I P700 chlorophyll a [Euphronia guianensis]	[more]
RZC56630.1	9.4e-12	80.43	hypothetical protein C5167_015500 [Papaver somniferum]	[more]
PPD91646.1	1.2e-11	80.43	hypothetical protein GOBAR_DD11401 [Gossypium barbadense]	[more]
TYJ15395.1	1.6e-11	80.43	hypothetical protein E1A91_A10G181100v1 [Gossypium mustelinum]	[more]

BLAST of MELO3C028145 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD89	2.7e-14	82.61	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psa...	[more]
Q06FW5	6.1e-14	80.43	Photosystem I P700 chlorophyll a apoprotein A1 OS=Pelargonium hortorum OX=4031 G...	[more]
Q06RD1	8.0e-14	80.43	Photosystem I P700 chlorophyll a apoprotein A1 OS=Jasminum nudiflorum OX=126431 ...	[more]
Q14FF7	8.0e-14	80.43	Photosystem I P700 chlorophyll a apoprotein A1 OS=Populus alba OX=43335 GN=psaA ...	[more]
A4GYR0	8.0e-14	80.43	Photosystem I P700 chlorophyll a apoprotein A1 OS=Populus trichocarpa OX=3694 GN...	[more]

BLAST of MELO3C028145 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1C8QF53	3.5e-12	82.61	Photosystem I P700 chlorophyll a apoprotein A1 OS=Euphronia guianensis OX=82261 ...	[more]
A0A4Y7J9A2	4.5e-12	80.43	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_015500 PE=4 SV=1	[more]
A0A7M3UZV1	7.7e-12	82.61	Photosystem I P700 chlorophyll a apoprotein A1 OS=Elaeocarpus japonicus OX=10089...	[more]
A0A7S8WTN0	7.7e-12	82.61	Photosystem I P700 apoprotein A1 OS=Elaeocarpus braceanus OX=1045333 GN=psaA PE=...	[more]
A0A5D2XMZ9	7.7e-12	80.43	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A10G181100v1 P...	[more]

BLAST of MELO3C028145 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00350.1	1.3e-14	78.26	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 1..46 e-value: 1.8E-11 score: 44.5
None	No IPR available	PANTHER	PTHR30128:SF56	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN	coord: 5..44
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 5..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028145.1	MELO3C028145.1	mRNA