MELO3C028086 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028086
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CACTA en-spm transposon protein
Location	chr08: 24218359 .. 24219028 (+)
RNA-Seq Expression	MELO3C028086
Synteny	MELO3C028086

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGAATGTTAAAAGAGATTATTAAATCAAATATCATAGATCAAAGTTATGTTATTCGACTTCATATGTTAGTGTGAAAATCATGTGTTAATAAAGTTTCTGATTTTAAAAAGTTTGGGCAAAGTTTGAGATGTCCATACAATATATGTATGCACATATTTATATCTAGTTTATATATTTTGATTCTAGCTATGTATTTGGTTATTGAATGTTTGTTTTTTATATGTCCATTGTCATTATGTCATATCGACGATCAAATTTTATGGAGACGGACGATATGTTCCTCCAGTTTGAGGAGGATTTAGATAACATTGCGGGAGGGTCGTCATCTGTGGGCGACAATACGGGTGAGTCTAAGAATTTTCTTCATTTTTAACTTACAAATATTTCATCTAGGGGTTTCCTACTTTATATGTTATTGTCTATTTATTGAGCAGAGTCTTCTTCTCAACAAACGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGCGCATTCCAATGACGATCGCCCCTGGAGCGGAGAAGCCTATTTCTCCACACGCCATTCGCTTCAGCCAGGCGATAGGCGTGTGCGTGCAAAAGACATTTCCCGTCCGCTGTCTTAAGCGGGCGGACGTTGGGAGATTTTTCATT

mRNA sequence

AAGGAATGTTAAAAGAGATTATTAAATCAAATATCATAGATCAAAGTTATGTTATTCGACTTCATATGTTAGTGTGAAAATCATGTGTTAATAAAGTTTCTGATTTTAAAAAGTTTGGGCAAAGTTTGAGATGTCCATACAATATATGTATGCACATATTTATATCTAGTTTATATATTTTGATTCTAGCTATGTATTTGGTTATTGAATGTTTGTTTTTTATATGTCCATTGTCATTATGTCATATCGACGATCAAATTTTATGGAGACGGACGATATGTTCCTCCAGTTTGAGGAGGATTTAGATAACATTGCGGGAGGGTCGTCATCTGTGGGCGACAATACGGAGTCTTCTTCTCAACAAACGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGCGCATTCCAATGACGATCGCCCCTGGAGCGGAGAAGCCTATTTCTCCACACGCCATTCGCTTCAGCCAGGCGATAGGCGTGTGCGTGCAAAAGACATTTCCCGTCCGCTGTCTTAAGCGGGCGGACGTTGGGAGATTTTTCATT

Coding sequence (CDS)

ATGTTTGTTTTTTATATGTCCATTGTCATTATGTCATATCGACGATCAAATTTTATGGAGACGGACGATATGTTCCTCCAGTTTGAGGAGGATTTAGATAACATTGCGGGAGGGTCGTCATCTGTGGGCGACAATACGGAGTCTTCTTCTCAACAAACGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGCGCATTCCAATGACGATCGCCCCTGGAGCGGAGAAGCCTATTTCTCCACACGCCATTCGCTTCAGCCAGGCGATAGGCGTGTGCGTGCAAAAGACATTTCCCGTCCGCTGTCTTAAGCGGGCGGACGTTGGGAGATTTTTCATT

Protein sequence

MFVFYMSIVIMSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADVGRFFI

Homology

[Close]

BLAST of MELO3C028086 vs. NCBI nr
Match: KAA0046834.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 2.9e-52
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 6   MSIVIMSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRL 65
           M  VIMSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNT SSSQQTTPTPRRRAQSRL
Sbjct: 250 MDKVIMSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTRSSSQQTTPTPRRRAQSRL 309

Query: 66  LELERHVAINGRIPMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADVGRFFI 125
           LELERHVAINGRIPMTIAPGAEKPISPHA+RFSQAIGVCV+KTFPVRCLK  +VGR +I
Sbjct: 310 LELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTNVGREYI 368

[Close]

BLAST of MELO3C028086 vs. NCBI nr
Match: KAA0025905.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 212.2 bits (539), Expect = 2.5e-51
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 7   SIVIMSYRRSNFMETDDMFLQFEEDLD-NIAGGSSSVGDNTESSSQQTTPTPRRRAQSRL 66
           ++ IMSYRRSNFMETDDMFLQFE+DLD NIAGGSSSVGDNTESSSQQ TPTPRRRAQSRL
Sbjct: 51  TLAIMSYRRSNFMETDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQATPTPRRRAQSRL 110

Query: 67  LELERHVAINGRIPMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADVGRFFI 125
           LELERHVAINGRIPMTIAPGAEKPISPHA+RFSQAIGVCV+KTFPVRCLK ADVGR +I
Sbjct: 111 LELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWADVGREYI 169

[Close]

BLAST of MELO3C028086 vs. NCBI nr
Match: KAA0045433.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 3.3e-51
Identity = 109/125 (87.20%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MFVFYMSIVIMSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTE-SSSQQTTPTPRR 60
           ++  Y+ IVIMSYRRSNFMETDDMFLQFEEDL+NI GGSSSVGDNT  SSSQQTTPTPRR
Sbjct: 101 VYFLYVHIVIMSYRRSNFMETDDMFLQFEEDLNNIVGGSSSVGDNTAGSSSQQTTPTPRR 160

Query: 61  RAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADV 120
           RAQSRLLELERH+AINGRIPMTIAPGAEKPISPH IRFSQAIGVCV+KTFPVRCLK ADV
Sbjct: 161 RAQSRLLELERHIAINGRIPMTIAPGAEKPISPHVIRFSQAIGVCVRKTFPVRCLKWADV 220

Query: 121 GRFFI 125
           GR +I
Sbjct: 221 GREYI 225

[Close]

BLAST of MELO3C028086 vs. NCBI nr
Match: TYJ99698.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 5.6e-51
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 7   SIVIMSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTE-SSSQQTTPTPRRRAQSRL 66
           ++VIMSYRRS+FMETDDMFLQFEEDLDNIAGGSSSVGDNT  SSSQQTTPTPRRRAQSRL
Sbjct: 90  TLVIMSYRRSSFMETDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQSRL 149

Query: 67  LELERHVAINGRIPMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADVGRFFI 125
           LELERHVAINGRIPMTIAPGAEKPISPHA+RFSQAIGVCV+KTFPVRCLK  DVGR +I
Sbjct: 150 LELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYI 208

[Close]

BLAST of MELO3C028086 vs. NCBI nr
Match: KAA0041798.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK27087.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 5.6e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 19  METDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGRI 78
           METDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGRI
Sbjct: 1   METDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGRI 60

Query: 79  PMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADVGRFFI 125
           PMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADVGRFFI
Sbjct: 61  PMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADVGRFFI 106

[Close]

BLAST of MELO3C028086 vs. ExPASy TrEMBL
Match: A0A5A7TUT1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001310 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.4e-52
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 6   MSIVIMSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRL 65
           M  VIMSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNT SSSQQTTPTPRRRAQSRL
Sbjct: 250 MDKVIMSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTRSSSQQTTPTPRRRAQSRL 309

Query: 66  LELERHVAINGRIPMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADVGRFFI 125
           LELERHVAINGRIPMTIAPGAEKPISPHA+RFSQAIGVCV+KTFPVRCLK  +VGR +I
Sbjct: 310 LELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTNVGREYI 368

[Close]

BLAST of MELO3C028086 vs. ExPASy TrEMBL
Match: A0A5A7SN68 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001940 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 7   SIVIMSYRRSNFMETDDMFLQFEEDLD-NIAGGSSSVGDNTESSSQQTTPTPRRRAQSRL 66
           ++ IMSYRRSNFMETDDMFLQFE+DLD NIAGGSSSVGDNTESSSQQ TPTPRRRAQSRL
Sbjct: 51  TLAIMSYRRSNFMETDDMFLQFEDDLDNNIAGGSSSVGDNTESSSQQATPTPRRRAQSRL 110

Query: 67  LELERHVAINGRIPMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADVGRFFI 125
           LELERHVAINGRIPMTIAPGAEKPISPHA+RFSQAIGVCV+KTFPVRCLK ADVGR +I
Sbjct: 111 LELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWADVGREYI 169

[Close]

BLAST of MELO3C028086 vs. ExPASy TrEMBL
Match: A0A5A7TPH1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold294G00310 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.6e-51
Identity = 109/125 (87.20%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MFVFYMSIVIMSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTE-SSSQQTTPTPRR 60
           ++  Y+ IVIMSYRRSNFMETDDMFLQFEEDL+NI GGSSSVGDNT  SSSQQTTPTPRR
Sbjct: 101 VYFLYVHIVIMSYRRSNFMETDDMFLQFEEDLNNIVGGSSSVGDNTAGSSSQQTTPTPRR 160

Query: 61  RAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADV 120
           RAQSRLLELERH+AINGRIPMTIAPGAEKPISPH IRFSQAIGVCV+KTFPVRCLK ADV
Sbjct: 161 RAQSRLLELERHIAINGRIPMTIAPGAEKPISPHVIRFSQAIGVCVRKTFPVRCLKWADV 220

Query: 121 GRFFI 125
           GR +I
Sbjct: 221 GREYI 225

[Close]

BLAST of MELO3C028086 vs. ExPASy TrEMBL
Match: A0A5D3DTK3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00990 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.7e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 19  METDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGRI 78
           METDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGRI
Sbjct: 1   METDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGRI 60

Query: 79  PMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADVGRFFI 125
           PMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADVGRFFI
Sbjct: 61  PMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADVGRFFI 106

[Close]

BLAST of MELO3C028086 vs. ExPASy TrEMBL
Match: A0A5D3BNG3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00960 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.7e-51
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 7   SIVIMSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTE-SSSQQTTPTPRRRAQSRL 66
           ++VIMSYRRS+FMETDDMFLQFEEDLDNIAGGSSSVGDNT  SSSQQTTPTPRRRAQSRL
Sbjct: 90  TLVIMSYRRSSFMETDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQSRL 149

Query: 67  LELERHVAINGRIPMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLKRADVGRFFI 125
           LELERHVAINGRIPMTIAPGAEKPISPHA+RFSQAIGVCV+KTFPVRCLK  DVGR +I
Sbjct: 150 LELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYI 208

The following BLAST results are available for this feature:

BLAST of MELO3C028086 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046834.1	2.9e-52	91.60	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0025905.1	2.5e-51	90.76	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0045433.1	3.3e-51	87.20	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYJ99698.1	5.6e-51	90.76	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0041798.1	5.6e-51	100.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK27087.1 CACTA en-...	[more]

BLAST of MELO3C028086 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TUT1	1.4e-52	91.60	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SN68	1.2e-51	90.76	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7TPH1	1.6e-51	87.20	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3DTK3	2.7e-51	100.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3BNG3	2.7e-51	90.76	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C028086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028086.1	MELO3C028086.1	mRNA