MELO3C028049.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C028049.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr05: 8511693 .. 8512649 (-)
RNA-Seq Expression	MELO3C028049.jh1
Synteny	MELO3C028049.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAACAAACACTTATTGGAGTCCTAACTGCATTCATGTTGGCCCAACGTCAGATTTTACTAACGTTGGAGCTATTAATGAACAACAATAAGCGTCTCCCACATACACCGCCCGATACACGTCATAGAATTAGGGAGCTTGCTTACTTTCGCATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAAGTGAACATTCGCAATTCTATGTCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCAATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGGTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTATGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAGTTCACTATAATTGACCTTTAGGTACATCGCAGTTAATTCATCGTGTTTCTTTCAACCTGCAGAACTGCCTAGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGAAAGGATCTGCAGCAGACTCGCGGATCCTACGTGACGCCATTTCACGAGAAAATGGACTACAAGTGCCAAATGGTATATCTTCTTTATAATAAAACACCGTCGCTTCCTACTTACCTATTTAAAGTTCATAAACAAACCATTTAATAACAGGATATTATTATCTGTGCGATGCGGGATATCCAAACGCAGAGGGGTTTCTCTCCCCGTACAGAGGCCAGCGGTACCATTTGCAAGAGTAG

mRNA sequence

ATGGATGAACAAACACTTATTGGAGTCCTAACTGCATTCATGTTGGCCCAACGTCAGATTTTACTAACGTTGGAGCTATTAATGAACAACAATAAGCGTCTCCCACATACACCGCCCGATACACGTCATAGAATTAGGGAGCTTGCTTACTTTCGCATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAAGTGAACATTCGCAATTCTATGTCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCAATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGGTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTATGAGGAGTTGATAAAGAGACCTGTTCCGAACTGCCTAGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGAAAGGATCTGCAGCAGACTCGCGGATCCTACGTGACGCCATTTCACGAGAAAATGGACTACAAGTGCCAAATGGATATTATTATCTGTGCGATGCGGGATATCCAAACGCAGAGGGGTTTCTCTCCCCGTACAGAGGCCAGCGGTACCATTTGCAAGAGTAG

Coding sequence (CDS)

ATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGGTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTATGAGGAGTTGATAAAGAGACCTGTTCCGAACTGCCTAGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGAAAGGATCTGCAGCAGACTCGCGGATCCTACGTGACGCCATTTCACGAGAAAATGGACTACAAGTGCCAAATGGATATTATTATCTGTGCGATGCGGGATATCCAAACGCAGAGGGGTTTCTCTCCCCGTACAGAGGCCAGCGGTACCATTTGCAAGAGTAG

Protein sequence

MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDAISRENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE

Homology

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BLAST of MELO3C028049.jh1 vs. NCBI nr
Match: KAA0033265.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 320 bits (821), Expect = 1.93e-109
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 60
           MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 128

Query: 61  GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDAISR 120
           GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADS ILRDAISR
Sbjct: 129 GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSGILRDAISR 188

Query: 121 ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE 157
           ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE
Sbjct: 189 ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE 225

[Close]

BLAST of MELO3C028049.jh1 vs. NCBI nr
Match: KAA0051443.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 317 bits (811), Expect = 4.09e-106
Identity = 153/157 (97.45%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 60
           MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 128

Query: 61  GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDAISR 120
           GTYIKVNVP GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDAISR
Sbjct: 129 GTYIKVNVPTGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISR 188

Query: 121 ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE 157
           ENGLQVP GYYYLCDAGYPNAEGFL+PYRGQRYHLQE
Sbjct: 189 ENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQE 225

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BLAST of MELO3C028049.jh1 vs. NCBI nr
Match: KAA0062587.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 317 bits (811), Expect = 4.09e-106
Identity = 153/157 (97.45%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 60
           MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 128

Query: 61  GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDAISR 120
           GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGW+GSAADS+ILRDAISR
Sbjct: 129 GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSQILRDAISR 188

Query: 121 ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE 157
           ENGLQVP GYYYLCDAGYPNAEGFL+PYRGQRYHLQE
Sbjct: 189 ENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQE 225

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BLAST of MELO3C028049.jh1 vs. NCBI nr
Match: KAA0042501.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 311 bits (797), Expect = 4.84e-105
Identity = 151/157 (96.18%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 60
           MVAMFLHVLAHDVKNRVIQREFVRS ETVSR+FNIVLLAVLRLYEELIKRPVPNCLGALD
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRYFNIVLLAVLRLYEELIKRPVPNCLGALD 128

Query: 61  GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDAISR 120
           GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVL GW+GSAADSRILRDAISR
Sbjct: 129 GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLIGWEGSAADSRILRDAISR 188

Query: 121 ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE 157
           ENGLQVP GYYYLCDAGYPNAEGFL+PYRGQRYHLQE
Sbjct: 189 ENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQE 225

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BLAST of MELO3C028049.jh1 vs. NCBI nr
Match: KAA0036923.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 309 bits (792), Expect = 1.74e-104
Identity = 150/157 (95.54%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 60
           MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEEL+KRPVPNCLGALD
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELMKRPVPNCLGALD 128

Query: 61  GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDAISR 120
           GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDAIS+
Sbjct: 129 GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQ 188

Query: 121 ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE 157
           ENGLQVP GYYYLCDAGYPNAEGFL PYRG  YHLQE
Sbjct: 189 ENGLQVPKGYYYLCDAGYPNAEGFLVPYRGHVYHLQE 225

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BLAST of MELO3C028049.jh1 vs. ExPASy Swiss-Prot
Match: Q9M2U3 (Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.5e-07
Identity = 36/116 (31.03%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 52  VPNCLGALDGTYIKVNVPAGDRPTFRTRKGE--IATNVLGVCDTKGDFVYVLAGWKGSAA 111
           +PNC GA+D T+I +N+PA +        GE   +  +  V D    F+ V+AGW GS  
Sbjct: 180 LPNCCGAIDITHIVMNLPAVEPSNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGWPGSLN 239

Query: 112 DSRILRDA--------ISRENGLQVPNG------YYYLCDAGYPNAEGFLSPYRGQ 152
           D  +L+++          R NG ++P         Y + D+G+P     L+PY+G+
Sbjct: 240 DDVVLKNSGFYKLVEKGKRLNGEKLPLSERTELREYIVGDSGFPLLPWLLTPYQGK 295

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BLAST of MELO3C028049.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SVS9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00620 PE=3 SV=1)

HSP 1 Score: 320 bits (821), Expect = 9.34e-110
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 60
           MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 128

Query: 61  GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDAISR 120
           GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADS ILRDAISR
Sbjct: 129 GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSGILRDAISR 188

Query: 121 ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE 157
           ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE
Sbjct: 189 ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE 225

[Close]

BLAST of MELO3C028049.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V6J9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00810 PE=3 SV=1)

HSP 1 Score: 317 bits (811), Expect = 1.98e-106
Identity = 153/157 (97.45%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 60
           MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 128

Query: 61  GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDAISR 120
           GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGW+GSAADS+ILRDAISR
Sbjct: 129 GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSQILRDAISR 188

Query: 121 ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE 157
           ENGLQVP GYYYLCDAGYPNAEGFL+PYRGQRYHLQE
Sbjct: 189 ENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQE 225

[Close]

BLAST of MELO3C028049.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U6C1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001970 PE=3 SV=1)

HSP 1 Score: 317 bits (811), Expect = 1.98e-106
Identity = 153/157 (97.45%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 60
           MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 128

Query: 61  GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDAISR 120
           GTYIKVNVP GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDAISR
Sbjct: 129 GTYIKVNVPTGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISR 188

Query: 121 ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE 157
           ENGLQVP GYYYLCDAGYPNAEGFL+PYRGQRYHLQE
Sbjct: 189 ENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQE 225

[Close]

BLAST of MELO3C028049.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TLQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00550 PE=3 SV=1)

HSP 1 Score: 311 bits (797), Expect = 2.35e-105
Identity = 151/157 (96.18%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 60
           MVAMFLHVLAHDVKNRVIQREFVRS ETVSR+FNIVLLAVLRLYEELIKRPVPNCLGALD
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRYFNIVLLAVLRLYEELIKRPVPNCLGALD 128

Query: 61  GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDAISR 120
           GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVL GW+GSAADSRILRDAISR
Sbjct: 129 GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLIGWEGSAADSRILRDAISR 188

Query: 121 ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE 157
           ENGLQVP GYYYLCDAGYPNAEGFL+PYRGQRYHLQE
Sbjct: 189 ENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQE 225

[Close]

BLAST of MELO3C028049.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T1V5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00150 PE=3 SV=1)

HSP 1 Score: 309 bits (792), Expect = 8.41e-105
Identity = 150/157 (95.54%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALD 60
           MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEEL+KRPVPNCLGALD
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELMKRPVPNCLGALD 128

Query: 61  GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDAISR 120
           GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDAIS+
Sbjct: 129 GTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQ 188

Query: 121 ENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE 157
           ENGLQVP GYYYLCDAGYPNAEGFL PYRG  YHLQE
Sbjct: 189 ENGLQVPKGYYYLCDAGYPNAEGFLVPYRGHVYHLQE 225

[Close]

BLAST of MELO3C028049.jh1 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-29
Identity = 65/162 (40.12%), Postives = 94/162 (58.02%), Query Frame = 0


Query: 2   VAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPN------- 61
           +A+FL ++ H+++ R +Q  F  SGET+SRHFN VL AV+ + ++   +P  N       
Sbjct: 78  LAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAISKDFF-QPNSNSDTLEND 137

Query: 62  ------CLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSA 121
                 C+G +D  +I V V   ++  FR   G +  NVL        F YVLAGW+GSA
Sbjct: 138 DPYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSA 197

Query: 122 ADSRILRDAISRENGLQVPNGYYYLCDAGYPNAEGFLSPYRG 151
           +D ++L  A++R N LQVP G YY+ D  YPN  GF++PY G
Sbjct: 198 SDQQVLNAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAPYHG 238

[Close]

BLAST of MELO3C028049.jh1 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 9.9e-19
Identity = 59/183 (32.24%), Postives = 88/183 (48.09%), Query Frame = 0


Query: 2   VAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRP-------VPN 61
           VAMFL +  H+   R +   F R+ ETV R F  VL A   L  + I+ P       +P 
Sbjct: 102 VAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREVLTATELLACDYIRTPTRQELYRIPE 161

Query: 62  CL--------------GALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYV 121
            L              GA+DGT++ V V    +  +  R    + N++ +CD K  F Y+
Sbjct: 162 RLQVDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYI 221

Query: 122 LAGWKGSAADSRILRDAISRENGLQV-PNGYYYLCDAGYPNAEGFLSPYRGQ-----RYH 158
             G  GS  D+ +L+ A   ++   + P+  YYL D+GYPN +G L+PYR       RYH
Sbjct: 222 WNGAPGSCYDTAVLQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYH 281

[Close]

BLAST of MELO3C028049.jh1 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-15
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 54  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSRI 113
           +C+GA+D T+I   V     P+FR RKG+I+ N+L  C+   +F+YVL+GW+GSA DS++
Sbjct: 24  DCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKV 83

Query: 114 LRDAISR-ENGLQVP 128
           L DA++R  N L VP
Sbjct: 84  LNDALTRNSNRLPVP 98

[Close]

BLAST of MELO3C028049.jh1 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-15
Identity = 54/157 (34.39%), Postives = 76/157 (48.41%), Query Frame = 0


Query: 2   VAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDG 61
           VA+FL + A +   R I   F  + ET+ R F+ VL A+ RL  E I+   P  +  L  
Sbjct: 60  VAIFLIICASNDTQRDIALRFGHAQETIWRKFHDVLKAMERLAVEYIR---PRKVEELRA 119

Query: 62  TYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDAISRE 121
              ++       P      G  + NVL +CD    F Y   G  GS  D+R+L  AIS +
Sbjct: 120 ISNRLQDDTRYWPFLMDLLGIASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISDD 179

Query: 122 NGLQV-PNGYYYLCDAGYPNAEGFLSPYRGQRYHLQE 158
               V P+  YYL D+GY N  G+L+PYR +    Q+
Sbjct: 180 PLFHVPPDSKYYLVDSGYANKRGYLAPYRREHREAQD 213

[Close]

BLAST of MELO3C028049.jh1 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 6.9e-12
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 97  FVYVLAGWKGSAADSRILRDAISRENGLQVPNGYYYLCDAGYPNAEGFLSPYRGQRYHLQ 156
           F+YVL+GW+GSA DSR+L DA+ +          +YL D G+ N   FL+P+RG RYHLQ
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAPFRGVRYHLQ 75

Query: 157 E 158
           E
Sbjct: 85  E 75

The following BLAST results are available for this feature:

BLAST of MELO3C028049.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033265.1	1.93e-109	99.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051443.1	4.09e-106	97.45	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062587.1	4.09e-106	97.45	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042501.1	4.84e-105	96.18	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036923.1	1.74e-104	95.54	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028049.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2U3	8.5e-07	31.03	Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1	[more]

BLAST of MELO3C028049.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVS9	9.34e-110	99.36	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V6J9	1.98e-106	97.45	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U6C1	1.98e-106	97.45	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TLQ0	2.35e-105	96.18	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T1V5	8.41e-105	95.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C028049.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	2.1e-29	40.12	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	9.9e-19	32.24	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	1.7e-15	48.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	3.9e-15	34.39	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	6.9e-12	50.82	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 59..150 e-value: 2.3E-12 score: 46.9
None	No IPR available	PANTHER	PTHR22930:SF211	NUCLEASE HARBI1-RELATED	coord: 1..152
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028049.jh1.t1	MELO3C028049.jh1.t1	mRNA