MELO3C028049 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028049
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr01: 19377006 .. 19377962 (-)
RNA-Seq Expression	MELO3C028049
Synteny	MELO3C028049

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAACAAACACTTATTGGAGTTCTAACTGCATTCACGTTGGCCCAACGTCAGATTTTACTAACGTTGGAGCTATTAATGAACAACAATAAGCGTCTCCCACATACACCGCCCGATACACGCCATAGAATTAGGGAGCTTGCTTACTTTCGCATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTACACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGATAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGAGCATCATAGAAGTTCACTATAATTGACCTTTAGGTACATCGCAGTTAATTCATCGTGTTTCTTTCAACCTGCAGAACTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCACCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTGTTTATAATAAAACACCGTCTCTTCCTACTTACCTATTTAAAGTTCATAAACAAACCATTTAATAACAGGATATTATTATTTGTGCGATGCTGGATATCCAAACGCGGAGGGGTTTCTCGCCCCGTACAGAGGCCAGCGGTACCATTTGCAAGAGTGG

mRNA sequence

ATGGATGAACAAACACTTATTGGAGTTCTAACTGCATTCACGTTGGCCCAACGTCAGATTTTACTAACGTTGGAGCTATTAATGAACAACAATAAGCGTCTCCCACATACACCGCCCGATACACGCCATAGAATTAGGGAGCTTGCTTACTTTCGCATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTACACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGATAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGAACTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCACCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGATATTATTATTTGTGCGATGCTGGATATCCAAACGCGGAGGGGTTTCTCGCCCCGTACAGAGGCCAGCGGTACCATTTGCAAGAGTGG

Coding sequence (CDS)

ATGGATGAACAAACACTTATTGGAGTTCTAACTGCATTCACGTTGGCCCAACGTCAGATTTTACTAACGTTGGAGCTATTAATGAACAACAATAAGCGTCTCCCACATACACCGCCCGATACACGCCATAGAATTAGGGAGCTTGCTTACTTTCGCATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTACACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGATAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGAACTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCACCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGATATTATTATTTGTGCGATGCTGGATATCCAAACGCGGAGGGGTTTCTCGCCCCGTACAGAGGCCAGCGGTACCATTTGCAAGAGTGG

Protein sequence

MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGEIVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLTGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW

Homology

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BLAST of MELO3C028049 vs. NCBI nr
Match: KAA0062587.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 461.5 bits (1186), Expect = 4.8e-126
Identity = 223/226 (98.67%), Postives = 224/226 (99.12%), Query Frame = 0


Query: 28  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 87
           MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 88  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGEIVSRHFNIVLLAVLRLYEELIKRPV 147
           TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE VSRHFNIVLLAVLRLYEELIKRPV
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120

Query: 148 PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLTGWEGSAADSR 207
           PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVL GWEGSAADS+
Sbjct: 121 PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSQ 180

Query: 208 ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 254
           ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW
Sbjct: 181 ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 226

[Close]

BLAST of MELO3C028049 vs. NCBI nr
Match: KAA0051443.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 459.1 bits (1180), Expect = 2.4e-125
Identity = 222/226 (98.23%), Postives = 223/226 (98.67%), Query Frame = 0


Query: 28  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 87
           MNNNKRLPHTPPDTRHRIRELAYFRMI+ESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIYESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 88  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGEIVSRHFNIVLLAVLRLYEELIKRPV 147
           TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE VSRHFNIVLLAVLRLYEELIKRPV
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120

Query: 148 PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLTGWEGSAADSR 207
           PNCLGALDGTYIKVNVP GDRPTFRTRKGEIATNVLGVCDTKGDFVYVL GWEGSAADSR
Sbjct: 121 PNCLGALDGTYIKVNVPTGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSR 180

Query: 208 ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 254
           ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW
Sbjct: 181 ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 226

[Close]

BLAST of MELO3C028049 vs. NCBI nr
Match: KAA0042501.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 457.6 bits (1176), Expect = 7.0e-125
Identity = 222/226 (98.23%), Postives = 223/226 (98.67%), Query Frame = 0


Query: 28  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 87
           MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 88  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGEIVSRHFNIVLLAVLRLYEELIKRPV 147
           TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS E VSR+FNIVLLAVLRLYEELIKRPV
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVSRYFNIVLLAVLRLYEELIKRPV 120

Query: 148 PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLTGWEGSAADSR 207
           PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVL GWEGSAADSR
Sbjct: 121 PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLIGWEGSAADSR 180

Query: 208 ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 254
           ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW
Sbjct: 181 ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 226

[Close]

BLAST of MELO3C028049 vs. NCBI nr
Match: KAA0056561.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 453.4 bits (1165), Expect = 1.3e-123
Identity = 224/240 (93.33%), Postives = 224/240 (93.33%), Query Frame = 0


Query: 28  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 87
           MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 88  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGEIVSRHFNIVLLAVLRLYEELIKRPV 147
           TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE VSRHFNIVLLAVLRLYEELIKRPV
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120

Query: 148 P--------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 207
           P              NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV
Sbjct: 121 PVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 180

Query: 208 YVLTGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 254
           YVL GWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW
Sbjct: 181 YVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 240

[Close]

BLAST of MELO3C028049 vs. NCBI nr
Match: KAA0031556.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0036353.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038064.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038976.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 453.4 bits (1165), Expect = 1.3e-123
Identity = 224/240 (93.33%), Postives = 224/240 (93.33%), Query Frame = 0


Query: 28  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 87
           MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 88  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGEIVSRHFNIVLLAVLRLYEELIKRPV 147
           TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE VSRHFNIVLLAVLRLYEELIKRPV
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120

Query: 148 P--------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 207
           P              NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV
Sbjct: 121 PVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 180

Query: 208 YVLTGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 254
           YVL GWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW
Sbjct: 181 YVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 240

[Close]

BLAST of MELO3C028049 vs. ExPASy Swiss-Prot
Match: Q9M2U3 (Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-06
Identity = 35/116 (30.17%), Postives = 56/116 (48.28%), Query Frame = 0


Query: 147 VPNCLGALDGTYIKVNVPAGDRPTFRTRKGE--IATNVLGVCDTKGDFVYVLTGWEGSAA 206
           +PNC GA+D T+I +N+PA +        GE   +  +  V D    F+ V+ GW GS  
Sbjct: 180 LPNCCGAIDITHIVMNLPAVEPSNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGWPGSLN 239

Query: 207 DSRILRDA--------ISRENGLQVPKG------YYYLCDAGYPNAEGFLAPYRGQ 247
           D  +L+++          R NG ++P         Y + D+G+P     L PY+G+
Sbjct: 240 DDVVLKNSGFYKLVEKGKRLNGEKLPLSERTELREYIVGDSGFPLLPWLLTPYQGK 295

[Close]

BLAST of MELO3C028049 vs. ExPASy TrEMBL
Match: A0A5A7V6J9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00810 PE=3 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 2.3e-126
Identity = 223/226 (98.67%), Postives = 224/226 (99.12%), Query Frame = 0


Query: 28  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 87
           MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 88  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGEIVSRHFNIVLLAVLRLYEELIKRPV 147
           TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE VSRHFNIVLLAVLRLYEELIKRPV
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120

Query: 148 PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLTGWEGSAADSR 207
           PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVL GWEGSAADS+
Sbjct: 121 PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSQ 180

Query: 208 ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 254
           ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW
Sbjct: 181 ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 226

[Close]

BLAST of MELO3C028049 vs. ExPASy TrEMBL
Match: A0A5A7U6C1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001970 PE=3 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 1.2e-125
Identity = 222/226 (98.23%), Postives = 223/226 (98.67%), Query Frame = 0


Query: 28  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 87
           MNNNKRLPHTPPDTRHRIRELAYFRMI+ESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIYESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 88  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGEIVSRHFNIVLLAVLRLYEELIKRPV 147
           TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE VSRHFNIVLLAVLRLYEELIKRPV
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120

Query: 148 PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLTGWEGSAADSR 207
           PNCLGALDGTYIKVNVP GDRPTFRTRKGEIATNVLGVCDTKGDFVYVL GWEGSAADSR
Sbjct: 121 PNCLGALDGTYIKVNVPTGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSR 180

Query: 208 ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 254
           ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW
Sbjct: 181 ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 226

[Close]

BLAST of MELO3C028049 vs. ExPASy TrEMBL
Match: A0A5A7TLQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00550 PE=3 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.4e-125
Identity = 222/226 (98.23%), Postives = 223/226 (98.67%), Query Frame = 0


Query: 28  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 87
           MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 88  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGEIVSRHFNIVLLAVLRLYEELIKRPV 147
           TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS E VSR+FNIVLLAVLRLYEELIKRPV
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVSRYFNIVLLAVLRLYEELIKRPV 120

Query: 148 PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLTGWEGSAADSR 207
           PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVL GWEGSAADSR
Sbjct: 121 PNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLIGWEGSAADSR 180

Query: 208 ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 254
           ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW
Sbjct: 181 ILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 226

[Close]

BLAST of MELO3C028049 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 6.4e-124
Identity = 224/240 (93.33%), Postives = 224/240 (93.33%), Query Frame = 0


Query: 28  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 87
           MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 88  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGEIVSRHFNIVLLAVLRLYEELIKRPV 147
           TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE VSRHFNIVLLAVLRLYEELIKRPV
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120

Query: 148 P--------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 207
           P              NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV
Sbjct: 121 PVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 180

Query: 208 YVLTGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 254
           YVL GWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW
Sbjct: 181 YVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 240

[Close]

BLAST of MELO3C028049 vs. ExPASy TrEMBL
Match: A0A5A7UST8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00660 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 6.4e-124
Identity = 224/240 (93.33%), Postives = 224/240 (93.33%), Query Frame = 0


Query: 28  MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 87
           MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 88  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGEIVSRHFNIVLLAVLRLYEELIKRPV 147
           TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE VSRHFNIVLLAVLRLYEELIKRPV
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120

Query: 148 P--------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 207
           P              NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV
Sbjct: 121 PVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 180

Query: 208 YVLTGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 254
           YVL GWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW
Sbjct: 181 YVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 240

[Close]

BLAST of MELO3C028049 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 145.2 bits (365), Expect = 7.1e-35
Identity = 77/208 (37.02%), Postives = 117/208 (56.25%), Query Frame = 0


Query: 51  FRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN 110
           +++++  +  C ++ RMD+  F  LC LL+    L  T  + +E  +A+FL ++ H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 111 RVIQREFVRSGEIVSRHFNIVLLAVLRLYEELIKRPVPN-------------CLGALDGT 170
           R +Q  F  SGE +SRHFN VL AV+ + ++   +P  N             C+G +D  
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVIAISKDFF-QPNSNSDTLENDDPYFKDCVGVVDSF 151

Query: 171 YIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLTGWEGSAADSRILRDAISREN 230
           +I V V   ++  FR   G +  NVL        F YVL GWEGSA+D ++L  A++R N
Sbjct: 152 HIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRN 211

Query: 231 GLQVPKGYYYLCDAGYPNAEGFLAPYRG 246
            LQVP+G YY+ D  YPN  GF+APY G
Sbjct: 212 KLQVPQGKYYIVDNKYPNLPGFIAPYHG 238

[Close]

BLAST of MELO3C028049 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 112.5 bits (280), Expect = 5.1e-25
Identity = 72/230 (31.30%), Postives = 108/230 (46.96%), Query Frame = 0


Query: 51  FRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN 110
           +R + +    C Q  RM    F  LC++L+    L  T  + +EE VAMFL +  H+   
Sbjct: 56  WRRLQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVY 115

Query: 111 RVIQREFVRSGEIVSRHFNIVLLAVLRLYEELIKRP-------VPNCL------------ 170
           R +   F R+ E V R F  VL A   L  + I+ P       +P  L            
Sbjct: 116 RDVGLRFGRNQETVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSG 175

Query: 171 --GALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLTGWEGSAADSRIL 230
             GA+DGT++ V V    +  +  R    + N++ +CD K  F Y+  G  GS  D+ +L
Sbjct: 176 FVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVL 235

Query: 231 RDAISRENGLQVPKG-YYYLCDAGYPNAEGFLAPYRGQ-----RYHLQEW 254
           + A   ++   +P    YYL D+GYPN +G LAPYR       RYH+ ++
Sbjct: 236 QIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQF 285

[Close]

BLAST of MELO3C028049 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-21
Identity = 66/200 (33.00%), Postives = 96/200 (48.00%), Query Frame = 0


Query: 54  IHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 113
           I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL + A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 114 QREFVRSGEIVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFRT 173
              F  + E + R F+ VL A+ RL  E I+   P  +  L     ++       P    
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYIR---PRKVEELRAISNRLQDDTRYWPFLMD 136

Query: 174 RKGEIATNVLGVCDTKGDFVYVLTGWEGSAADSRILRDAISRENGLQV-PKGYYYLCDAG 233
             G  + NVL +CD    F Y   G  GS  D+R+L  AIS +    V P   YYL D+G
Sbjct: 137 LLGIASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVPPDSKYYLVDSG 196

Query: 234 YPNAEGFLAPYRGQRYHLQE 253
           Y N  G+LAPYR +    Q+
Sbjct: 197 YANKRGYLAPYRREHREAQD 213

[Close]

BLAST of MELO3C028049 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.0 bits (201), Expect = 7.4e-16
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 149 NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLTGWEGSAADSRI 208
           +C+GA+D T+I   V     P+FR RKG+I+ N+L  C+   +F+YVL+GWEGSA DS++
Sbjct: 24  DCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKV 83

Query: 209 LRDAISR-ENGLQVPK 224
           L DA++R  N L VP+
Sbjct: 84  LNDALTRNSNRLPVPE 99

[Close]

BLAST of MELO3C028049 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-12
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 192 FVYVLTGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQ 251
           F+YVL+GWEGSA DSR+L DA+ +          +YL D G+ N   FLAP+RG RYHLQ
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAPFRGVRYHLQ 76

Query: 252 EW 254
           E+
Sbjct: 85  EF 76

The following BLAST results are available for this feature:

BLAST of MELO3C028049 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062587.1	4.8e-126	98.67	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051443.1	2.4e-125	98.23	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042501.1	7.0e-125	98.23	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056561.1	1.3e-123	93.33	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031556.1	1.3e-123	93.33	retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon...	[more]

BLAST of MELO3C028049 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2U3	3.0e-06	30.17	Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1	[more]

BLAST of MELO3C028049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6J9	2.3e-126	98.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U6C1	1.2e-125	98.23	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TLQ0	3.4e-125	98.23	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D7X8	6.4e-124	93.33	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UST8	6.4e-124	93.33	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C028049 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	7.1e-35	37.02	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	5.1e-25	31.30	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	1.5e-21	33.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	7.4e-16	48.68	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	1.0e-12	53.23	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 154..245 e-value: 1.6E-12 score: 47.3
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 29..247
None	No IPR available	PANTHER	PTHR22930:SF211	NUCLEASE HARBI1-RELATED	coord: 29..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028049.1	MELO3C028049.1	mRNA