MELO3C028045 (gene) Melon (DHL92) v4

Overview
NameMELO3C028045
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase
Locationchr05: 15709704 .. 15709961 (-)
RNA-Seq ExpressionMELO3C028045
SyntenyMELO3C028045
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAATCTACGTTGTGTAGGGTACACCCAGTACAACAACGTTTACAAGCTCTACGATGTAGTGGGGCCCGTCCAGCACTCCCATCGTCTTTGTCGTAATGGGGCCCGCCCAGCACTCACGACAGCATCGTTGTTACGGAGTACTGTAACGACCCAACTTTTCCGGACTAAGCTGAGGTTACTACCAAATACCAAAACTCGACCATTCAACATAAAATTTAAAACGGACCAGATACGATTCATTAAAACATTATAA

mRNA sequence

ATGACAAATCTACGTTGTGTAGGGTACACCCAGTACAACAACGTTTACAAGCTCTACGATGTAGTGGGGCCCGTCCAGCACTCCCATCGTCTTTGTCGTAATGGGGCCCGCCCAGCACTCACGACAGCATCGTTGTTACGGAGTACTGTAACGACCCAACTTTTCCGGACTAAGCTGAGGTTACTACCAAATACCAAAACTCGACCATTCAACATAAAATTTAAAACGGACCAGATACGATTCATTAAAACATTATAA

Coding sequence (CDS)

ATGACAAATCTACGTTGTGTAGGGTACACCCAGTACAACAACGTTTACAAGCTCTACGATGTAGTGGGGCCCGTCCAGCACTCCCATCGTCTTTGTCGTAATGGGGCCCGCCCAGCACTCACGACAGCATCGTTGTTACGGAGTACTGTAACGACCCAACTTTTCCGGACTAAGCTGAGGTTACTACCAAATACCAAAACTCGACCATTCAACATAAAATTTAAAACGGACCAGATACGATTCATTAAAACATTATAA

Protein sequence

MTNLRCVGYTQYNNVYKLYDVVGPVQHSHRLCRNGARPALTTASLLRSTVTTQLFRTKLRLLPNTKTRPFNIKFKTDQIRFIKTL
Homology
BLAST of MELO3C028045 vs. NCBI nr
Match: KAA0040961.1 (hypothetical protein E6C27_scaffold125G001610 [Cucumis melo var. makuwa] >TYK20296.1 hypothetical protein E5676_scaffold708G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-14
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 0

Query: 8  GYTQYNNVYKLYDVVGPVQHSHRLCRNGARPALTTASLLRSTV 51
          GYTQYNNVYKLYDVVGPVQHSHRLCR+GARPALTTASLLRST+
Sbjct: 29 GYTQYNNVYKLYDVVGPVQHSHRLCRSGARPALTTASLLRSTL 71

BLAST of MELO3C028045 vs. NCBI nr
Match: KAA0040192.1 (hypothetical protein E6C27_scaffold1164G00040 [Cucumis melo var. makuwa] >TYK25937.1 hypothetical protein E5676_scaffold190G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 6.4e-14
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0

Query: 8  GYTQYNNVYKLYDVVGPVQHSHRLCRNGARPALTTASLLRSTV 51
          GYTQYNNVYKLYDVVGP QHSHRLCR+GARPALTTASLLRST+
Sbjct: 29 GYTQYNNVYKLYDVVGPAQHSHRLCRSGARPALTTASLLRSTL 71

BLAST of MELO3C028045 vs. NCBI nr
Match: KAA0032760.1 (hypothetical protein E6C27_scaffold708G00020 [Cucumis melo var. makuwa] >TYK23928.1 hypothetical protein E5676_scaffold428G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 6.4e-14
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0

Query: 8  GYTQYNNVYKLYDVVGPVQHSHRLCRNGARPALTTASLLRSTV 51
          GYTQYNNVYKLYDVVGP QHSHRLCR+GARPALTTASLLRST+
Sbjct: 29 GYTQYNNVYKLYDVVGPAQHSHRLCRSGARPALTTASLLRSTL 71

BLAST of MELO3C028045 vs. NCBI nr
Match: KAA0062250.1 (hypothetical protein E6C27_scaffold679G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-13
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0

Query: 5  RCVGYTQYNNVYKLYDVVGPVQHSHRLCRNGARPALTTASLLRSTV 51
          RCVGYTQYNNVYK YDVV   QHSHRLCR+GARPALTTASLLRST+
Sbjct: 35 RCVGYTQYNNVYKFYDVVRLAQHSHRLCRSGARPALTTASLLRSTL 80

BLAST of MELO3C028045 vs. NCBI nr
Match: KAA0039545.1 (hypothetical protein E6C27_scaffold744G00040 [Cucumis melo var. makuwa] >TYK01756.1 hypothetical protein E5676_scaffold775G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 0

Query: 7  VGYTQYNNVYKLYDVVGPVQHSHRLCRNGARPALTTASLLRSTV 51
          +GYTQYNNVYKLY+VVGP QHSHRLCR+GARPALTTASLLRST+
Sbjct: 33 MGYTQYNNVYKLYNVVGPAQHSHRLCRSGARPALTTASLLRSTL 76

BLAST of MELO3C028045 vs. ExPASy TrEMBL
Match: A0A5A7TH18 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00230 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 0

Query: 8  GYTQYNNVYKLYDVVGPVQHSHRLCRNGARPALTTASLLRSTV 51
          GYTQYNNVYKLYDVVGPVQHSHRLCR+GARPALTTASLLRST+
Sbjct: 29 GYTQYNNVYKLYDVVGPVQHSHRLCRSGARPALTTASLLRSTL 71

BLAST of MELO3C028045 vs. ExPASy TrEMBL
Match: A0A5A7T9S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00340 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.1e-14
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0

Query: 8  GYTQYNNVYKLYDVVGPVQHSHRLCRNGARPALTTASLLRSTV 51
          GYTQYNNVYKLYDVVGP QHSHRLCR+GARPALTTASLLRST+
Sbjct: 29 GYTQYNNVYKLYDVVGPAQHSHRLCRSGARPALTTASLLRSTL 71

BLAST of MELO3C028045 vs. ExPASy TrEMBL
Match: A0A5A7SPD9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00020 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.1e-14
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0

Query: 8  GYTQYNNVYKLYDVVGPVQHSHRLCRNGARPALTTASLLRSTV 51
          GYTQYNNVYKLYDVVGP QHSHRLCR+GARPALTTASLLRST+
Sbjct: 29 GYTQYNNVYKLYDVVGPAQHSHRLCRSGARPALTTASLLRSTL 71

BLAST of MELO3C028045 vs. ExPASy TrEMBL
Match: A0A5A7V4V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00140 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.0e-14
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0

Query: 5  RCVGYTQYNNVYKLYDVVGPVQHSHRLCRNGARPALTTASLLRSTV 51
          RCVGYTQYNNVYK YDVV   QHSHRLCR+GARPALTTASLLRST+
Sbjct: 35 RCVGYTQYNNVYKFYDVVRLAQHSHRLCRSGARPALTTASLLRSTL 80

BLAST of MELO3C028045 vs. ExPASy TrEMBL
Match: A0A5A7TDP0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00960 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 0

Query: 7  VGYTQYNNVYKLYDVVGPVQHSHRLCRNGARPALTTASLLRSTV 51
          +GYTQYNNVYKLY+VVGP QHSHRLCR+GARPALTTASLLRST+
Sbjct: 33 MGYTQYNNVYKLYNVVGPAQHSHRLCRSGARPALTTASLLRSTL 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0040961.12.2e-1495.35hypothetical protein E6C27_scaffold125G001610 [Cucumis melo var. makuwa] >TYK202... [more]
KAA0040192.16.4e-1493.02hypothetical protein E6C27_scaffold1164G00040 [Cucumis melo var. makuwa] >TYK259... [more]
KAA0032760.16.4e-1493.02hypothetical protein E6C27_scaffold708G00020 [Cucumis melo var. makuwa] >TYK2392... [more]
KAA0062250.11.8e-1386.96hypothetical protein E6C27_scaffold679G00140 [Cucumis melo var. makuwa][more]
KAA0039545.12.4e-1388.64hypothetical protein E6C27_scaffold744G00040 [Cucumis melo var. makuwa] >TYK0175... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TH181.1e-1495.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T9S03.1e-1493.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SPD93.1e-1493.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V4V19.0e-1486.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TDP01.2e-1388.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028045.1MELO3C028045.1mRNA