MELO3C028033 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028033
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Coatomer, beta' subunit
Location	chr01: 17331329 .. 17331479 (+)
RNA-Seq Expression	MELO3C028033
Synteny	MELO3C028033

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTGTGATTGGTTATAATGAAGGAACTATTATGGTAAAACTTGGCCGGAAAGTACCTATTGCAAGTATGGACAATAGTGGAAAGATAACATGGGCTAAGCATAATGAAATTCAAACAGTAAACATCAAAAGTGTGGGAGCAGACTTTGAG

mRNA sequence

GGTTGTGATTGGTTATAATGAAGGAACTATTATGGTAAAACTTGGCCGGAAAGTACCTATTGCAAGTATGGACAATAGTGGAAAGATAACATGGGCTAAGCATAATGAAATTCAAACAGTAAACATCAAAAGTGTGGGAGCAGACTTTGAG

Coding sequence (CDS)

ATGGTAAAACTTGGCCGGAAAGTACCTATTGCAAGTATGGACAATAGTGGAAAGATAACATGGGCTAAGCATAATGAAATTCAAACAGTAAACATCAAAAGTGTGGGAGCAGACTTTGAG

Protein sequence

MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE

Homology

[Close]

BLAST of MELO3C028033 vs. NCBI nr
Match: KAA0034904.1 (coatomer subunit beta'-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE
Sbjct: 68  MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 107

[Close]

BLAST of MELO3C028033 vs. NCBI nr
Match: KAA0063078.1 (coatomer subunit beta'-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE
Sbjct: 68  MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 107

[Close]

BLAST of MELO3C028033 vs. NCBI nr
Match: KAA0042978.1 (coatomer subunit beta'-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE
Sbjct: 68  MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 107

[Close]

BLAST of MELO3C028033 vs. NCBI nr
Match: KAA0061416.1 (coatomer subunit beta'-2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE
Sbjct: 68  MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 107

[Close]

BLAST of MELO3C028033 vs. NCBI nr
Match: KAA0043450.1 (coatomer subunit beta'-2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 3.7e-12
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 1  MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
          MVKLGRKVPIASMDN GKI WAKHNEIQTVNIKSVGADFE
Sbjct: 57 MVKLGRKVPIASMDNGGKIIWAKHNEIQTVNIKSVGADFE 96

[Close]

BLAST of MELO3C028033 vs. ExPASy Swiss-Prot
Match: Q9C827 (Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-13
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           MVKLGR++P+ASMDN+GKI WAKHNEIQT NIKS+GAD+E
Sbjct: 296 MVKLGREIPVASMDNTGKIIWAKHNEIQTANIKSIGADYE 335

[Close]

BLAST of MELO3C028033 vs. ExPASy Swiss-Prot
Match: Q9CAA0 (Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 7.7e-13
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGAD 39
           MVKLGR++P+ASMDNSGKI WAKHNEI TVNIKSVGAD
Sbjct: 296 MVKLGREIPVASMDNSGKIIWAKHNEIHTVNIKSVGAD 333

[Close]

BLAST of MELO3C028033 vs. ExPASy Swiss-Prot
Match: Q5VQ78 (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0143900 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-12
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           M+K+GR+VP+ASMD SGKI WAKHNEIQTVNIK+VGA FE
Sbjct: 296 MIKMGREVPVASMDTSGKIIWAKHNEIQTVNIKTVGAGFE 335

[Close]

BLAST of MELO3C028033 vs. ExPASy Swiss-Prot
Match: Q8L828 (Coatomer subunit beta'-3 OS=Arabidopsis thaliana OX=3702 GN=At3g15980 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-12
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           MVKLGR++P+ASMD+SGKI WAKHNEIQT NIKS+GA +E
Sbjct: 296 MVKLGREIPVASMDSSGKIIWAKHNEIQTANIKSIGAGYE 335

[Close]

BLAST of MELO3C028033 vs. ExPASy Swiss-Prot
Match: Q6H8D5 (Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0209100 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-12
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           M+K+GR+VP+ASMD+SGKI W+KHNEIQTVNIK++GAD E
Sbjct: 296 MIKIGREVPVASMDSSGKIIWSKHNEIQTVNIKTIGADNE 335

[Close]

BLAST of MELO3C028033 vs. ExPASy TrEMBL
Match: A0A5A7V4L3 (Coatomer subunit beta'-2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G001140 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE
Sbjct: 68  MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 107

[Close]

BLAST of MELO3C028033 vs. ExPASy TrEMBL
Match: A0A5A7TJJ8 (Coatomer subunit beta'-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00510 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE
Sbjct: 68  MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 107

[Close]

BLAST of MELO3C028033 vs. ExPASy TrEMBL
Match: A0A5A7SUH0 (Coatomer subunit beta'-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00320 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE
Sbjct: 68  MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 107

[Close]

BLAST of MELO3C028033 vs. ExPASy TrEMBL
Match: A0A5A7V629 (Coatomer subunit beta'-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001960 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE
Sbjct: 68  MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 107

[Close]

BLAST of MELO3C028033 vs. ExPASy TrEMBL
Match: A0A5A7TJJ7 (Coatomer subunit beta'-2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00680 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 1  MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
          MVKLGRKVPIASMDN GKI WAKHNEIQTVNIKSVGADFE
Sbjct: 57 MVKLGRKVPIASMDNGGKIIWAKHNEIQTVNIKSVGADFE 96

[Close]

BLAST of MELO3C028033 vs. TAIR 10
Match: AT1G52360.1 (Coatomer, beta' subunit )

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-14
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           MVKLGR++P+ASMDN+GKI WAKHNEIQT NIKS+GAD+E
Sbjct: 296 MVKLGREIPVASMDNTGKIIWAKHNEIQTANIKSIGADYE 335

[Close]

BLAST of MELO3C028033 vs. TAIR 10
Match: AT1G52360.2 (Coatomer, beta' subunit )

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-14
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGADFE 41
           MVKLGR++P+ASMDN+GKI WAKHNEIQT NIKS+GAD+E
Sbjct: 340 MVKLGREIPVASMDNTGKIIWAKHNEIQTANIKSIGADYE 379

[Close]

BLAST of MELO3C028033 vs. TAIR 10
Match: AT1G79990.3 (structural molecules )

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-14
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGAD 39
           MVKLGR++P+ASMDNSGKI WAKHNEI TVNIKSVGAD
Sbjct: 296 MVKLGREIPVASMDNSGKIIWAKHNEIHTVNIKSVGAD 333

[Close]

BLAST of MELO3C028033 vs. TAIR 10
Match: AT1G79990.1 (structural molecules )

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-14
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGAD 39
           MVKLGR++P+ASMDNSGKI WAKHNEI TVNIKSVGAD
Sbjct: 511 MVKLGREIPVASMDNSGKIIWAKHNEIHTVNIKSVGAD 548

[Close]

BLAST of MELO3C028033 vs. TAIR 10
Match: AT1G79990.5 (structural molecules )

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-14
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1   MVKLGRKVPIASMDNSGKITWAKHNEIQTVNIKSVGAD 39
           MVKLGR++P+ASMDNSGKI WAKHNEI TVNIKSVGAD
Sbjct: 296 MVKLGREIPVASMDNSGKIIWAKHNEIHTVNIKSVGAD 333

The following BLAST results are available for this feature:

BLAST of MELO3C028033 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034904.1	2.5e-13	100.00	coatomer subunit beta'-2-like [Cucumis melo var. makuwa]	[more]
KAA0063078.1	2.5e-13	100.00	coatomer subunit beta'-2-like [Cucumis melo var. makuwa]	[more]
KAA0042978.1	2.5e-13	100.00	coatomer subunit beta'-2-like [Cucumis melo var. makuwa]	[more]
KAA0061416.1	2.5e-13	100.00	coatomer subunit beta'-2-like isoform X3 [Cucumis melo var. makuwa]	[more]
KAA0043450.1	3.7e-12	95.00	coatomer subunit beta'-2-like isoform X3 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028033 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C827	1.5e-13	80.00	Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1	[more]
Q9CAA0	7.7e-13	86.84	Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2	[more]
Q5VQ78	1.0e-12	80.00	Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g014390...	[more]
Q8L828	1.7e-12	77.50	Coatomer subunit beta'-3 OS=Arabidopsis thaliana OX=3702 GN=At3g15980 PE=2 SV=1	[more]
Q6H8D5	3.8e-12	75.00	Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g020910...	[more]

BLAST of MELO3C028033 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4L3	1.2e-13	100.00	Coatomer subunit beta'-2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TJJ8	1.2e-13	100.00	Coatomer subunit beta'-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7SUH0	1.2e-13	100.00	Coatomer subunit beta'-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7V629	1.2e-13	100.00	Coatomer subunit beta'-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TJJ7	1.8e-12	95.00	Coatomer subunit beta'-2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of MELO3C028033 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52360.1	1.1e-14	80.00	Coatomer, beta' subunit	[more]
AT1G52360.2	1.1e-14	80.00	Coatomer, beta' subunit	[more]
AT1G79990.3	5.4e-14	86.84	structural molecules	[more]
AT1G79990.1	5.4e-14	86.84	structural molecules	[more]
AT1G79990.5	5.4e-14	86.84	structural molecules	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19876	COATOMER	coord: 1..40
None	No IPR available	PANTHER	PTHR19876:SF50	COATOMER SUBUNIT BETA'	coord: 1..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028033.1	MELO3C028033.1	mRNA