MELO3C028023 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028023
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	50S ribosomal protein L20, chloroplastic
Location	chr09: 5980044 .. 5980432 (+)
RNA-Seq Expression	MELO3C028023
Synteny	MELO3C028023

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTCATACACAATCTCTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAATACGAAGATTGCAAAGAATCCAGCGGAATGCTTAAAATGGAGTTCTCTAGAGAATGA

mRNA sequence

GATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTCATACACAATCTCTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAATACGAAGATTGCAAAGAATCCAGCGGAATGCTTAAAATGGAGTTCTCTAGAGAATGA

Coding sequence (CDS)

TATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTCATACACAATCTCTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAATACGAAGATTGCAAAGAATCCAGCGGAATGCTTAAAATGGAGTTCTCTAGAGAATGA

Protein sequence

YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGMLKMEFSRE

Homology

[Close]

BLAST of MELO3C028023 vs. NCBI nr
Match: YP_004841806.1 (ribosomal protein L20 [Cucumis melo subsp. melo] >YP_009860096.1 ribosomal protein L20 [Cucumis melo subsp. agrestis] >ASY96631.1 ribosomal protein L20 [Cucumis melo var. conomon] >ASY96719.1 ribosomal protein L20 [Cucumis melo var. makuwa] >ASY96806.1 ribosomal protein L20 [Cucumis melo var. momordica] >ASY96893.1 ribosomal protein L20 [Cucumis melo var. dudaim] >ASY96980.1 ribosomal protein L20 [Cucumis melo var. cantalupo] >ASY97154.1 ribosomal protein L20 [Cucumis melo var. inodorus] >ASY97328.1 ribosomal protein L20 [Cucumis melo var. flexuosus] >QJF46406.1 ribosomal protein L20 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 3.0e-60
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 120
           VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM
Sbjct: 68  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 127

Query: 121 LKMEFSRE 129
           LKMEFS E
Sbjct: 128 LKMEFSGE 135

[Close]

BLAST of MELO3C028023 vs. NCBI nr
Match: YP_009752182.1 (ribosomal protein L20 [Linnaeosicyos amara] >QIT05592.1 ribosomal protein L20 [Linnaeosicyos amara])

HSP 1 Score: 216.9 bits (551), Expect = 1.0e-52
Identity = 118/128 (92.19%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDR RQKRNFR+LWI RINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRSRQKRNFRRLWITRINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 120
           VIR NKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEI   ED +ESSGM
Sbjct: 68  VIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEI---EDWEESSGM 127

Query: 121 LKMEFSRE 129
           LKMEFS E
Sbjct: 128 LKMEFSGE 132

[Close]

BLAST of MELO3C028023 vs. NCBI nr
Match: YP_009439914.1 (ribosomal protein L20 [Gynostemma caulopterum] >ATG86764.1 ribosomal protein L20 [Gynostemma caulopterum])

HSP 1 Score: 215.3 bits (547), Expect = 3.0e-52
Identity = 115/128 (89.84%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRG+ KRNFR LWIARINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGKLKRNFRHLWIARINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 120
           VIR NKV YSYSRFIHNLYK+QLLLNRKILAQIAILNRNCLYM+SNEI K +D KESSGM
Sbjct: 68  VIRYNKVYYSYSRFIHNLYKKQLLLNRKILAQIAILNRNCLYMVSNEIRKSKDWKESSGM 127

Query: 121 LKMEFSRE 129
            KMEFS E
Sbjct: 128 FKMEFSGE 135

[Close]

BLAST of MELO3C028023 vs. NCBI nr
Match: YP_009468884.1 (ribosomal protein L20 [Gynostemma compressum] >AVA29855.1 ribosomal protein L20 [Gynostemma compressum])

HSP 1 Score: 211.8 bits (538), Expect = 3.4e-51
Identity = 113/128 (88.28%), Postives = 118/128 (92.19%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRL RTITQQKIRALASAY+DRG+ KRNFR LWIARINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLNRTITQQKIRALASAYQDRGKLKRNFRHLWIARINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 120
           VIR NKV YSYSRFIHNLYK+QLLLNRKILAQIAILNRNCLYM+SNEI K +D KESSGM
Sbjct: 68  VIRYNKVYYSYSRFIHNLYKKQLLLNRKILAQIAILNRNCLYMVSNEIRKSKDWKESSGM 127

Query: 121 LKMEFSRE 129
            KMEFS E
Sbjct: 128 FKMEFSGE 135

[Close]

BLAST of MELO3C028023 vs. NCBI nr
Match: YP_009317409.1 (ribosomal protein L20 [Coccinia grandis] >YP_009420817.1 ribosomal protein L20 [Citrullus colocynthis] >YP_009431665.1 ribosomal protein L20 [Citrullus rehmii] >YP_009456169.1 ribosomal protein L20 [Lagenaria siceraria] >YP_009752350.1 ribosomal protein L20 [Bryonia marmorata] >YP_010131117.1 ribosomal protein L20 [Benincasa hispida] >QHB75986.1 ribosomal protein L20 [Cucumis melo subsp. melo] >QNM38554.1 ribosomal protein L20 [Lagenaria siceraria var. microcarpa] >QZL38616.1 ribosomal protein L20 [Citrullus naudinianus] >AHM88712.1 ribosomal protein L20 [Lagenaria siceraria] >AHM88771.1 ribosomal protein L20 [Lagenaria siceraria])

HSP 1 Score: 208.4 bits (529), Expect = 3.7e-50
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 111
           VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 68  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]

BLAST of MELO3C028023 vs. ExPASy Swiss-Prot
Match: Q4VZJ4 (50S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-52
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 111
           VIRSN VDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 68  VIRSNNVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]

BLAST of MELO3C028023 vs. ExPASy Swiss-Prot
Match: Q68RY3 (50S ribosomal protein L20, chloroplastic OS=Panax ginseng OX=4054 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.3e-47
Identity = 100/121 (82.64%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL S++RDR RQKRNFR+LWI RINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALVSSHRDRDRQKRNFRRLWITRINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 120
           VIR   V YSYSR IH+LYK+QLLLNRKILAQIAI N+NCLYMISNEIIK  D KES+G+
Sbjct: 68  VIREGGVSYSYSRLIHDLYKKQLLLNRKILAQIAISNKNCLYMISNEIIKEVDWKESTGI 127

Query: 121 L 122
           +
Sbjct: 128 I 128

[Close]

BLAST of MELO3C028023 vs. ExPASy Swiss-Prot
Match: Q09G23 (50S ribosomal protein L20, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.2e-46
Identity = 98/110 (89.09%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFAS+FRGAHSRLTRT TQQK+RAL SA+RDRGRQKRNFR+LWI RINA
Sbjct: 8   YIARRRRTKIRLFASTFRGAHSRLTRTTTQQKMRALVSAHRDRGRQKRNFRRLWITRINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 111
           VIR NKV YSYSR IH+LYKRQLLLNRKILAQIAI NRNCLYMISNEIIK
Sbjct: 68  VIRENKVSYSYSRLIHDLYKRQLLLNRKILAQIAISNRNCLYMISNEIIK 117

[Close]

BLAST of MELO3C028023 vs. ExPASy Swiss-Prot
Match: Q7FNS5 (50S ribosomal protein L20, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.0e-46
Identity = 100/121 (82.64%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI RINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALVSAHRDRDRKKRDFRRLWITRINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 120
           VIR   V YSYSR IH+LYKRQLLLNRKILAQIAI NRNCLYMISNEIIK  D KES+ +
Sbjct: 68  VIRERGVSYSYSRLIHDLYKRQLLLNRKILAQIAISNRNCLYMISNEIIKEVDWKESTRI 127

Query: 121 L 122
           +
Sbjct: 128 I 128

[Close]

BLAST of MELO3C028023 vs. ExPASy Swiss-Prot
Match: Q3C1K6 (50S ribosomal protein L20, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.0e-46
Identity = 100/121 (82.64%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI RINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALVSAHRDRDRKKRDFRRLWITRINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 120
           VIR   V YSYSR IH+LYKRQLLLNRKILAQIAI NRNCLYMISNEIIK  D KES+ +
Sbjct: 68  VIRERGVSYSYSRLIHDLYKRQLLLNRKILAQIAISNRNCLYMISNEIIKEVDWKESTRI 127

Query: 121 L 122
           +
Sbjct: 128 I 128

[Close]

BLAST of MELO3C028023 vs. ExPASy TrEMBL
Match: A0A249RZK5 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 120
           VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM
Sbjct: 68  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 127

Query: 121 LKMEFSRE 129
           LKMEFS E
Sbjct: 128 LKMEFSGE 135

[Close]

BLAST of MELO3C028023 vs. ExPASy TrEMBL
Match: A0A1S4EU28 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo OX=3656 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 120
           VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM
Sbjct: 68  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 127

Query: 121 LKMEFSRE 129
           LKMEFS E
Sbjct: 128 LKMEFSGE 135

[Close]

BLAST of MELO3C028023 vs. ExPASy TrEMBL
Match: A0A286NG26 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo var. flexuosus OX=1120798 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 120
           VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM
Sbjct: 68  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 127

Query: 121 LKMEFSRE 129
           LKMEFS E
Sbjct: 128 LKMEFSGE 135

[Close]

BLAST of MELO3C028023 vs. ExPASy TrEMBL
Match: A0A249RY24 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 120
           VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM
Sbjct: 68  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 127

Query: 121 LKMEFSRE 129
           LKMEFS E
Sbjct: 128 LKMEFSGE 135

[Close]

BLAST of MELO3C028023 vs. ExPASy TrEMBL
Match: A0A249RZ58 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo var. dudaim OX=2034236 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA
Sbjct: 8   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 120
           VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM
Sbjct: 68  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGM 127

Query: 121 LKMEFSRE 129
           LKMEFS E
Sbjct: 128 LKMEFSGE 135

[Close]

BLAST of MELO3C028023 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 )

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-42
Identity = 87/110 (79.09%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   YIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINA 60
           YIARRRRTK+RLFASSFRGAHSRLTRT+TQQ+IRAL SA+RDRG++KR+FR+LWI RINA
Sbjct: 8   YIARRRRTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRLWITRINA 67

Query: 61  VIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 111
           VI    V YSY+ FIHNLYK+QLLLNRKILAQIA+LNR+CLY ISN+I K
Sbjct: 68  VIHEMGVFYSYNEFIHNLYKKQLLLNRKILAQIALLNRSCLYTISNDIKK 117

[Close]

BLAST of MELO3C028023 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 )

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-09
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 7  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNK 66
          + +I   A  FRG      R   ++  +AL  +YRDR  +KR  R LWI RINA  R + 
Sbjct: 3  KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQHG 62

Query: 67 VDYSYSRFIHNLYKRQLLLNRKILAQIAI 96
          V  +Y  FIH L K  + LNRK+L+++++
Sbjct: 63 V--NYGNFIHGLMKENIQLNRKVLSELSM 89

The following BLAST results are available for this feature:

BLAST of MELO3C028023 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841806.1	3.0e-60	99.22	ribosomal protein L20 [Cucumis melo subsp. melo] >YP_009860096.1 ribosomal prote...	[more]
YP_009752182.1	1.0e-52	92.19	ribosomal protein L20 [Linnaeosicyos amara] >QIT05592.1 ribosomal protein L20 [L...	[more]
YP_009439914.1	3.0e-52	89.84	ribosomal protein L20 [Gynostemma caulopterum] >ATG86764.1 ribosomal protein L20...	[more]
YP_009468884.1	3.4e-51	88.28	ribosomal protein L20 [Gynostemma compressum] >AVA29855.1 ribosomal protein L20 ...	[more]
YP_009317409.1	3.7e-50	100.00	ribosomal protein L20 [Coccinia grandis] >YP_009420817.1 ribosomal protein L20 [...	[more]

BLAST of MELO3C028023 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZJ4	1.9e-52	99.09	50S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=...	[more]
Q68RY3	2.3e-47	82.64	50S ribosomal protein L20, chloroplastic OS=Panax ginseng OX=4054 GN=rpl20 PE=3 ...	[more]
Q09G23	1.2e-46	89.09	50S ribosomal protein L20, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl...	[more]
Q7FNS5	2.0e-46	82.64	50S ribosomal protein L20, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl20 ...	[more]
Q3C1K6	2.0e-46	82.64	50S ribosomal protein L20, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=rpl2...	[more]

BLAST of MELO3C028023 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A249RZK5	1.5e-60	99.22	50S ribosomal protein L20, chloroplastic OS=Cucumis melo var. cantalupensis OX=3...	[more]
A0A1S4EU28	1.5e-60	99.22	50S ribosomal protein L20, chloroplastic OS=Cucumis melo OX=3656 GN=rpl20 PE=3 S...	[more]
A0A286NG26	1.5e-60	99.22	50S ribosomal protein L20, chloroplastic OS=Cucumis melo var. flexuosus OX=11207...	[more]
A0A249RY24	1.5e-60	99.22	50S ribosomal protein L20, chloroplastic OS=Cucumis melo subsp. agrestis OX=2176...	[more]
A0A249RZ58	1.5e-60	99.22	50S ribosomal protein L20, chloroplastic OS=Cucumis melo var. dudaim OX=2034236 ...	[more]

BLAST of MELO3C028023 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00660.1	4.0e-42	79.09	ribosomal protein L20	[more]
AT1G16740.1	3.4e-09	39.33	Ribosomal protein L20	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005813	Ribosomal protein L20	PRINTS	PR00062	RIBOSOMALL20	coord: 5..34 score: 42.32 coord: 35..64 score: 57.37 coord: 70..96 score: 52.86
IPR005813	Ribosomal protein L20	PFAM	PF00453	Ribosomal_L20	coord: 3..101 e-value: 6.7E-31 score: 106.6
IPR005813	Ribosomal protein L20	TIGRFAM	TIGR01032	TIGR01032	coord: 2..106 e-value: 3.4E-25 score: 86.5
IPR005813	Ribosomal protein L20	PANTHER	PTHR10986	39S RIBOSOMAL PROTEIN L20	coord: 3..108
IPR005813	Ribosomal protein L20	PROSITE	PS00937	RIBOSOMAL_L20	coord: 47..63
IPR005813	Ribosomal protein L20	HAMAP	MF_00382	Ribosomal_L20	coord: 2..110 score: 20.688173
IPR005813	Ribosomal protein L20	CDD	cd07026	Ribosomal_L20	coord: 1..106 e-value: 8.87289E-38 score: 121.822
None	No IPR available	GENE3D	6.10.160.10		coord: 1..48 e-value: 1.2E-9 score: 40.2
None	No IPR available	PANTHER	PTHR10986:SF12	39S RIBOSOMAL PROTEIN L20, MITOCHONDRIAL	coord: 3..108
IPR035566	Ribosomal protein L20, C-terminal	GENE3D	1.10.1900.20	Ribosomal protein L20	coord: 49..111 e-value: 1.5E-20 score: 74.5
IPR035566	Ribosomal protein L20, C-terminal	SUPERFAMILY	74731	Ribosomal protein L20	coord: 2..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028023.1	MELO3C028023.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome