MELO3C028015 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028015
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA-directed RNA polymerase subunit beta''
Location	chr07: 5176173 .. 5176600 (+)
RNA-Seq Expression	MELO3C028015
Synteny	MELO3C028015

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGGTTGTTACGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTTTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCAGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAACCCCCC

mRNA sequence

AGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGGTTGTTACGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTTTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCAGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAACCCCCC

Coding sequence (CDS)

ATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGGTTGTTACGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTTTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCAGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAACCCCCC

Protein sequence

IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLEPP

Homology

[Close]

BLAST of MELO3C028015 vs. NCBI nr
Match: YP_004841773.1 (RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA polymerase beta'' subunit [Cucumis melo subsp. agrestis] >ASY96578.1 RNA polymerase beta'' subunit [Cucumis melo var. conomon] >ASY96665.1 RNA polymerase beta'' subunit [Cucumis melo var. makuwa] >ASY96839.1 RNA polymerase beta'' subunit [Cucumis melo var. dudaim] >ASY97100.1 RNA polymerase beta'' subunit [Cucumis melo var. inodorus] >AEM76882.1 RNA polymerase beta'' subunit [Cucumis melo subsp. melo])

HSP 1 Score: 278.1 bits (710), Expect = 4.2e-71
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA
Sbjct: 1213 IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 1272

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV
Sbjct: 1273 ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 1332

Query: 121  GTGFRELAHRSRQHNNIPLEPP 143
            GTGFRELAHRSRQHNNIPLEPP
Sbjct: 1333 GTGFRELAHRSRQHNNIPLEPP 1354

[Close]

BLAST of MELO3C028015 vs. NCBI nr
Match: QJF46373.1 (RNA polymerase beta'' subunit [Cucumis melo] >QRW36545.1 RNA polymerase beta'' subunit [Cucumis melo])

HSP 1 Score: 278.1 bits (710), Expect = 4.2e-71
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA
Sbjct: 1209 IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 1268

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV
Sbjct: 1269 ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 1328

Query: 121  GTGFRELAHRSRQHNNIPLEPP 143
            GTGFRELAHRSRQHNNIPLEPP
Sbjct: 1329 GTGFRELAHRSRQHNNIPLEPP 1350

[Close]

BLAST of MELO3C028015 vs. NCBI nr
Match: ASY96752.1 (RNA polymerase beta'' subunit [Cucumis melo var. momordica] >ASY96926.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo] >ASY97274.1 RNA polymerase beta'' subunit [Cucumis melo var. flexuosus] >ASY97013.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo] >ASY97187.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo])

HSP 1 Score: 278.1 bits (710), Expect = 4.2e-71
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA
Sbjct: 1213 IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 1272

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV
Sbjct: 1273 ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 1332

Query: 121  GTGFRELAHRSRQHNNIPLEPP 143
            GTGFRELAHRSRQHNNIPLEPP
Sbjct: 1333 GTGFRELAHRSRQHNNIPLEPP 1354

[Close]

BLAST of MELO3C028015 vs. NCBI nr
Match: QHB75953.1 (RNA polymerase beta II subunit [Cucumis melo subsp. melo])

HSP 1 Score: 278.1 bits (710), Expect = 4.2e-71
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA
Sbjct: 1204 IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 1263

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV
Sbjct: 1264 ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 1323

Query: 121  GTGFRELAHRSRQHNNIPLEPP 143
            GTGFRELAHRSRQHNNIPLEPP
Sbjct: 1324 GTGFRELAHRSRQHNNIPLEPP 1345

[Close]

BLAST of MELO3C028015 vs. NCBI nr
Match: YP_009751896.1 (RNA polymerase beta'' subunit [Cyclanthera pedata] >QIT04714.1 RNA polymerase beta'' subunit [Cyclanthera pedata])

HSP 1 Score: 276.9 bits (707), Expect = 9.4e-71
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA
Sbjct: 1201 IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 1260

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGITKA+LNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV
Sbjct: 1261 ICYRAVLLGITKAALNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 1320

Query: 121  GTGFRELAHRSRQHNNIPLEPP 143
            GTGFRELAHRSRQHNNIPLEPP
Sbjct: 1321 GTGFRELAHRSRQHNNIPLEPP 1342

[Close]

BLAST of MELO3C028015 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 4.7e-73
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA
Sbjct: 1211 IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 1270

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV
Sbjct: 1271 ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 1330

Query: 121  GTGFRELAHRSRQHNNIPLEPP 143
            GTGFRELAHRSRQHNNIPLE P
Sbjct: 1331 GTGFRELAHRSRQHNNIPLETP 1352

[Close]

BLAST of MELO3C028015 vs. ExPASy Swiss-Prot
Match: Q0G9M9 (DNA-directed RNA polymerase subunit beta'' OS=Liriodendron tulipifera OX=3415 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.2e-69
Identity = 132/140 (94.29%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEE 
Sbjct: 1199 IQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEG 1258

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRA+LLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV
Sbjct: 1259 ICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV 1318

Query: 121  GTGFRELAHRSRQHNNIPLE 141
            GTGF+ L HRSRQHNNIPLE
Sbjct: 1319 GTGFKGLVHRSRQHNNIPLE 1338

[Close]

BLAST of MELO3C028015 vs. ExPASy Swiss-Prot
Match: A6MM26 (DNA-directed RNA polymerase subunit beta'' OS=Buxus microphylla OX=153571 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.4e-69
Identity = 132/140 (94.29%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGV+IHNRHIEIIVRQITSKVLVSE+GMSNVFSPGELIGLLRAERTGRALEEA
Sbjct: 1206 IQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFSPGELIGLLRAERTGRALEEA 1265

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGG+IPV
Sbjct: 1266 ICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGLIPV 1325

Query: 121  GTGFRELAHRSRQHNNIPLE 141
            GTGF+ L HRSRQHNNIPLE
Sbjct: 1326 GTGFKVLVHRSRQHNNIPLE 1345

[Close]

BLAST of MELO3C028015 vs. ExPASy Swiss-Prot
Match: Q09G56 (DNA-directed RNA polymerase subunit beta'' OS=Platanus occidentalis OX=4403 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.4e-69
Identity = 132/140 (94.29%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL RAERTGRALEEA
Sbjct: 1204 IQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLFRAERTGRALEEA 1263

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV
Sbjct: 1264 ICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV 1323

Query: 121  GTGFRELAHRSRQHNNIPLE 141
            GTGF+ L HRSR+HNNIPLE
Sbjct: 1324 GTGFKGLVHRSREHNNIPLE 1343

[Close]

BLAST of MELO3C028015 vs. ExPASy Swiss-Prot
Match: A6MMB2 (DNA-directed RNA polymerase subunit beta'' OS=Chloranthus spicatus OX=13006 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-68
Identity = 131/140 (93.57%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA
Sbjct: 1204 IQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 1263

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRA+LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV
Sbjct: 1264 ICYRAILLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV 1323

Query: 121  GTGFRELAHRSRQHNNIPLE 141
            GTGF+ L HRSRQHNN PLE
Sbjct: 1324 GTGFKGLVHRSRQHNNSPLE 1343

[Close]

BLAST of MELO3C028015 vs. ExPASy TrEMBL
Match: A0A249RZW9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA
Sbjct: 1213 IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 1272

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV
Sbjct: 1273 ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 1332

Query: 121  GTGFRELAHRSRQHNNIPLEPP 143
            GTGFRELAHRSRQHNNIPLEPP
Sbjct: 1333 GTGFRELAHRSRQHNNIPLEPP 1354

[Close]

BLAST of MELO3C028015 vs. ExPASy TrEMBL
Match: A0A249RXP5 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA
Sbjct: 1213 IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 1272

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV
Sbjct: 1273 ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 1332

Query: 121  GTGFRELAHRSRQHNNIPLEPP 143
            GTGFRELAHRSRQHNNIPLEPP
Sbjct: 1333 GTGFRELAHRSRQHNNIPLEPP 1354

[Close]

BLAST of MELO3C028015 vs. ExPASy TrEMBL
Match: A0A286NFX2 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. flexuosus OX=1120798 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA
Sbjct: 1213 IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 1272

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV
Sbjct: 1273 ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 1332

Query: 121  GTGFRELAHRSRQHNNIPLEPP 143
            GTGFRELAHRSRQHNNIPLEPP
Sbjct: 1333 GTGFRELAHRSRQHNNIPLEPP 1354

[Close]

BLAST of MELO3C028015 vs. ExPASy TrEMBL
Match: A0A249RYY9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. dudaim OX=2034236 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA
Sbjct: 1213 IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 1272

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV
Sbjct: 1273 ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 1332

Query: 121  GTGFRELAHRSRQHNNIPLEPP 143
            GTGFRELAHRSRQHNNIPLEPP
Sbjct: 1333 GTGFRELAHRSRQHNNIPLEPP 1354

[Close]

BLAST of MELO3C028015 vs. ExPASy TrEMBL
Match: A0A249RYA1 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. conomon OX=3657 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA
Sbjct: 1213 IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 1272

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV
Sbjct: 1273 ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 1332

Query: 121  GTGFRELAHRSRQHNNIPLEPP 143
            GTGFRELAHRSRQHNNIPLEPP
Sbjct: 1333 GTGFRELAHRSRQHNNIPLEPP 1354

[Close]

BLAST of MELO3C028015 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 243.8 bits (621), Expect = 8.3e-65
Identity = 127/141 (90.07%), Postives = 133/141 (94.33%), Query Frame = 0


Query: 1    IQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA 60
            IQKVYRSQGV+IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLRAERTGRALEEA
Sbjct: 1200 IQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEA 1259

Query: 61   ICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV 120
            ICYRAVLLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGG+IP 
Sbjct: 1260 ICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPA 1319

Query: 121  GTGFRE-LAHRSRQHNNIPLE 141
            GTGF + L H SRQH NI LE
Sbjct: 1320 GTGFNKGLVHCSRQHTNIILE 1340

[Close]

BLAST of MELO3C028015 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 51.6 bits (122), Expect = 6.0e-07
Identity = 27/71 (38.03%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 59   EAICYRAVLLGITKASLNTQSF--ISEASFQETARVLAKAALRGRIDWLRGLKENVVLGG 118
            + + YR  L+ IT+  +N      +   SF+ET  +L  AA     D LRG+ EN++LG 
Sbjct: 1394 DTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQ 1453

Query: 119  MIPVGTGFREL 128
            + P+GTG  EL
Sbjct: 1454 LAPIGTGDCEL 1464

[Close]

BLAST of MELO3C028015 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-05
Identity = 24/77 (31.17%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 57   LEEAICYRAVLLGITKASLN--TQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 116
            L + + YR  +LGI +  +    +S + +ASF+ T   L  AA  G++D + G+ E V++
Sbjct: 1285 LADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIM 1344

Query: 117  GGMIPVGTGFRELAHRS 132
            G  + +GTG  ++  R+
Sbjct: 1345 GIPMKLGTGILKVLQRT 1361

[Close]

BLAST of MELO3C028015 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-05
Identity = 24/77 (31.17%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 57   LEEAICYRAVLLGITKASLN--TQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 116
            L + + YR  +LGI +  +    +S + +ASF+ T   L  AA  G++D + G+ E V++
Sbjct: 1300 LADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIM 1359

Query: 117  GGMIPVGTGFRELAHRS 132
            G  + +GTG  ++  R+
Sbjct: 1360 GIPMKLGTGILKVLQRT 1376

The following BLAST results are available for this feature:

BLAST of MELO3C028015 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841773.1	4.2e-71	100.00	RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA pol...	[more]
QJF46373.1	4.2e-71	100.00	RNA polymerase beta'' subunit [Cucumis melo] >QRW36545.1 RNA polymerase beta'' s...	[more]
ASY96752.1	4.2e-71	100.00	RNA polymerase beta'' subunit [Cucumis melo var. momordica] >ASY96926.1 RNA poly...	[more]
QHB75953.1	4.2e-71	100.00	RNA polymerase beta II subunit [Cucumis melo subsp. melo]	[more]
YP_009751896.1	9.4e-71	99.30	RNA polymerase beta'' subunit [Cyclanthera pedata] >QIT04714.1 RNA polymerase be...	[more]

BLAST of MELO3C028015 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	4.7e-73	99.30	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
Q0G9M9	3.2e-69	94.29	DNA-directed RNA polymerase subunit beta'' OS=Liriodendron tulipifera OX=3415 GN...	[more]
A6MM26	5.4e-69	94.29	DNA-directed RNA polymerase subunit beta'' OS=Buxus microphylla OX=153571 GN=rpo...	[more]
Q09G56	5.4e-69	94.29	DNA-directed RNA polymerase subunit beta'' OS=Platanus occidentalis OX=4403 GN=r...	[more]
A6MMB2	1.6e-68	93.57	DNA-directed RNA polymerase subunit beta'' OS=Chloranthus spicatus OX=13006 GN=r...	[more]

BLAST of MELO3C028015 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A249RZW9	2.1e-71	100.00	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. cantalupensis OX...	[more]
A0A249RXP5	2.1e-71	100.00	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. agrestis OX=21...	[more]
A0A286NFX2	2.1e-71	100.00	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. flexuosus OX=112...	[more]
A0A249RYY9	2.1e-71	100.00	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. dudaim OX=203423...	[more]
A0A249RYA1	2.1e-71	100.00	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. conomon OX=3657 ...	[more]

BLAST of MELO3C028015 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	8.3e-65	90.07	DNA-directed RNA polymerase family protein	[more]
AT4G35800.1	6.0e-07	38.03	RNA polymerase II large subunit	[more]
AT5G60040.1	3.3e-05	31.17	nuclear RNA polymerase C1	[more]
AT5G60040.2	3.3e-05	31.17	nuclear RNA polymerase C1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.1790.20		coord: 1..76 e-value: 2.7E-26 score: 94.0
None	No IPR available	GENE3D	1.10.150.390		coord: 77..137 e-value: 2.7E-25 score: 89.7
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 1..140
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..140
None	No IPR available	CDD	cd02655	RNAP_beta'_C	coord: 1..124 e-value: 5.35591E-69 score: 205.069
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 1..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028015.1	MELO3C028015.1	mRNA