MELO3C028012 (gene) Melon (DHL92) v4

Overview
NameMELO3C028012
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCell division control protein 6-like protein B
Locationchr01: 27211652 .. 27211801 (-)
RNA-Seq ExpressionMELO3C028012
SyntenyMELO3C028012
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCCATTACTCGAGCAAATCAGTGCAAGGTCGAGAGTGTAACAGAGACCAATTCCCCGAAGCGGAAATTGAGATCCAGTAGTGTGCAGAGGTAACAAAGCCCTGTCTCTACGCCGGTGAATTGGAAATCTCCTCGTCGGTGCCTT

mRNA sequence

ATGAAAGCCATTACTCGAGCAAATCAGTGCAAGGTCGAGAGTGTAACAGAGACCAATTCCCCGAAGCGGAAATTGAGATCCAGTAGTGTGCAGAGGTAACAAAGCCCTGTCTCTACGCCGGTGAATTGGAAATCTCCTCGTCGGTGCCTT

Coding sequence (CDS)

ATGAAAGCCATTACTCGAGCAAATCAGTGCAAGGTCGAGAGTGTAACAGAGACCAATTCCCCGAAGCGGAAATTGAGATCCAGTAGTGTGCAGAGGTAA

Protein sequence

MKAITRANQCKVESVTETNSPKRKLRSSSVQR
Homology
BLAST of MELO3C028012 vs. NCBI nr
Match: KAA0035999.1 (cell division control protein 6-like protein B [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 1  MKAITRANQCKVESVTETNSPKRKLRSSSVQR 33
          M AITRANQCKVESVTETNSPKRKLRSSSVQR
Sbjct: 1  MTAITRANQCKVESVTETNSPKRKLRSSSVQR 32

BLAST of MELO3C028012 vs. NCBI nr
Match: TYK19434.1 (cell division control protein 6-like protein B [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 5.9e-05
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 1  MKAITRANQCKVESVTETNSPKRKLRSSSVQR 33
          M AITRANQCKVESVTETN PKRKLRSSSVQR
Sbjct: 1  MTAITRANQCKVESVTETNFPKRKLRSSSVQR 32

BLAST of MELO3C028012 vs. NCBI nr
Match: XP_016903141.1 (PREDICTED: cell division control protein 6 homolog B [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 5.9e-05
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 1  MKAITRANQCKVESVTETNSPKRKLRSSSVQR 33
          M AITRANQCKVESV ETNSPKRKLRSSSVQR
Sbjct: 1  MTAITRANQCKVESVMETNSPKRKLRSSSVQR 32

BLAST of MELO3C028012 vs. NCBI nr
Match: TYK17092.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 5.9e-05
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 1  MKAITRANQCKVESVTETNSPKRKLRSSSVQR 33
          M AITRANQCKVESV ETNSPKRKLRSSSVQR
Sbjct: 1  MTAITRANQCKVESVMETNSPKRKLRSSSVQR 32

BLAST of MELO3C028012 vs. NCBI nr
Match: KAA0033142.1 (cell division control protein 6-like protein B [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 5.9e-05
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 1  MKAITRANQCKVESVTETNSPKRKLRSSSVQR 33
          M AITRANQCKVESV ETNSPKRKLRSSSVQR
Sbjct: 1  MTAITRANQCKVESVMETNSPKRKLRSSSVQR 32

BLAST of MELO3C028012 vs. ExPASy TrEMBL
Match: A0A5A7T3M1 (Cell division control protein 6-like protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G002140 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.8e-06
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 1  MKAITRANQCKVESVTETNSPKRKLRSSSVQR 33
          M AITRANQCKVESVTETNSPKRKLRSSSVQR
Sbjct: 1  MTAITRANQCKVESVTETNSPKRKLRSSSVQR 32

BLAST of MELO3C028012 vs. ExPASy TrEMBL
Match: A0A5D3CZW3 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00240 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-05
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 1  MKAITRANQCKVESVTETNSPKRKLRSSSVQR 33
          M AITRANQCKVESV ETNSPKRKLRSSSVQR
Sbjct: 1  MTAITRANQCKVESVMETNSPKRKLRSSSVQR 32

BLAST of MELO3C028012 vs. ExPASy TrEMBL
Match: A0A5D3D7A9 (Cell division control protein 6-like protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00850 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-05
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 1  MKAITRANQCKVESVTETNSPKRKLRSSSVQR 33
          M AITRANQCKVESVTETN PKRKLRSSSVQR
Sbjct: 1  MTAITRANQCKVESVTETNFPKRKLRSSSVQR 32

BLAST of MELO3C028012 vs. ExPASy TrEMBL
Match: A0A5A7SPM5 (Cell division control protein 6-like protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G002820 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-05
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 1  MKAITRANQCKVESVTETNSPKRKLRSSSVQR 33
          M AITRANQCKVESV ETNSPKRKLRSSSVQR
Sbjct: 1  MTAITRANQCKVESVMETNSPKRKLRSSSVQR 32

BLAST of MELO3C028012 vs. ExPASy TrEMBL
Match: A0A1S4E4I1 (Cell division control protein OS=Cucumis melo OX=3656 GN=LOC103502097 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-05
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 1  MKAITRANQCKVESVTETNSPKRKLRSSSVQR 33
          M AITRANQCKVESV ETNSPKRKLRSSSVQR
Sbjct: 1  MTAITRANQCKVESVMETNSPKRKLRSSSVQR 32

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0035999.11.2e-0596.88cell division control protein 6-like protein B [Cucumis melo var. makuwa][more]
TYK19434.15.9e-0593.75cell division control protein 6-like protein B [Cucumis melo var. makuwa][more]
XP_016903141.15.9e-0593.75PREDICTED: cell division control protein 6 homolog B [Cucumis melo][more]
TYK17092.15.9e-0593.75U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa][more]
KAA0033142.15.9e-0593.75cell division control protein 6-like protein B [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T3M15.8e-0696.88Cell division control protein 6-like protein B OS=Cucumis melo var. makuwa OX=11... [more]
A0A5D3CZW32.9e-0593.75U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A5D3D7A92.9e-0593.75Cell division control protein 6-like protein B OS=Cucumis melo var. makuwa OX=11... [more]
A0A5A7SPM52.9e-0593.75Cell division control protein 6-like protein B OS=Cucumis melo var. makuwa OX=11... [more]
A0A1S4E4I12.9e-0593.75Cell division control protein OS=Cucumis melo OX=3656 GN=LOC103502097 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028012.1MELO3C028012.1mRNA