MELO3C027991 (gene) Melon (DHL92) v4

Overview
NameMELO3C027991
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein Ycf2
Locationchr02: 23094501 .. 23094653 (-)
RNA-Seq ExpressionMELO3C027991
SyntenyMELO3C027991
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAA

mRNA sequence

ATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAA

Coding sequence (CDS)

ATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAA

Protein sequence

MGWRSRLWGQINTFEEERLEYQSHRSHKYHTKSHQSNRFFEKYETSKSYK
Homology
[Close]
BLAST of MELO3C027991 vs. NCBI nr
Match: QDF64401.1 (hypothetical chloroplast RF21 [Teucrium stocksianum subsp. stenophyllum] >QDF64421.1 hypothetical chloroplast RF21 [Teucrium stocksianum subsp. stenophyllum])

HSP 1 Score: 69.7 bits (169), Expect = 8.1e-09
Identity = 37/49 (75.51%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 3    WRSRL-WGQINTFEEERLEYQSHRSHKYHTKSHQSNRFFEKYETSKSYK 51
            WR    WGQINTF EE  E QSHR H+ HTKSHQSN FFEKYETSKSYK
Sbjct: 1409 WRQHAWWGQINTFYEEIFESQSHRYHRAHTKSHQSNHFFEKYETSKSYK 1457

[Close]
BLAST of MELO3C027991 vs. NCBI nr
Match: PHT98337.1 (Protein Ycf2 [Capsicum chinense])

HSP 1 Score: 53.9 bits (128), Expect = 4.6e-04
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 19  LEYQSHRSHKYHTKSHQSNRFFEKYETSKSYK 51
           +EYQSHR H+ +TKSHQSN FFEKYETSKSYK
Sbjct: 181 IEYQSHRDHRSYTKSHQSNHFFEKYETSKSYK 212

[Close]
BLAST of MELO3C027991 vs. ExPASy TrEMBL
Match: A0A4Y6I4X1 (Hypothetical chloroplast RF21 OS=Teucrium stocksianum subsp. stenophyllum OX=2172031 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 37/49 (75.51%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 3    WRSRL-WGQINTFEEERLEYQSHRSHKYHTKSHQSNRFFEKYETSKSYK 51
            WR    WGQINTF EE  E QSHR H+ HTKSHQSN FFEKYETSKSYK
Sbjct: 1409 WRQHAWWGQINTFYEEIFESQSHRYHRAHTKSHQSNHFFEKYETSKSYK 1457

[Close]
BLAST of MELO3C027991 vs. ExPASy TrEMBL
Match: A0A2G3AVS5 (Protein Ycf2 OS=Capsicum chinense OX=80379 GN=BC332_32737 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-04
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 19  LEYQSHRSHKYHTKSHQSNRFFEKYETSKSYK 51
           +EYQSHR H+ +TKSHQSN FFEKYETSKSYK
Sbjct: 181 IEYQSHRDHRSYTKSHQSNHFFEKYETSKSYK 212

The following BLAST results are available for this feature:
BLAST of MELO3C027991 vs. NCBI nr
Match NameE-valueIdentityDescription
QDF64401.18.1e-0975.51hypothetical chloroplast RF21 [Teucrium stocksianum subsp. stenophyllum] >QDF644... [more]
PHT98337.14.6e-0481.25Protein Ycf2 [Capsicum chinense][more]
BLAST of MELO3C027991 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C027991 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4Y6I4X13.9e-0975.51Hypothetical chloroplast RF21 OS=Teucrium stocksianum subsp. stenophyllum OX=217... [more]
A0A2G3AVS52.2e-0481.25Protein Ycf2 OS=Capsicum chinense OX=80379 GN=BC332_32737 PE=3 SV=1[more]
BLAST of MELO3C027991 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027991.1MELO3C027991.1mRNA