MELO3C027919 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027919
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DUF4218 domain-containing protein
Location	chr01: 27588294 .. 27588502 (-)
RNA-Seq Expression	MELO3C027919
Synteny	MELO3C027919

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGGACGGCCGCACGCTCCCACGAGAAGAACTTCAACGGCTGCACGTTTCGACGACCGTAGCTTCGACGGCCGCAGGCTTCGACGACCGCAGCTTCGACGGCTGCACGCTTCGACGACAGCAGCTTCGACGACAACCACCGCCTCGCGTCATTCATCGCGTCAATCGGGCTGCGACCATCCACTGTTTCTCGTCTAACGACAACCGCC

mRNA sequence

CTTGGACGGCCGCACGCTCCCACGAGAAGAACTTCAACGGCTGCACGCTTCGACGACCGCAGCTTCGACGGCTGCACGCTTCGACGACAGCAGCTTCGACGACAACCACCGCCTCGCGTCATTCATCGCGTCAATCGGGCTGCGACCATCCACTGTTTCTCGTCTAACGACAACCGCC

Coding sequence (CDS)

CTTGGACGGCCGCACGCTCCCACGAGAAGAACTTCAACGGCTGCACGCTTCGACGACCGCAGCTTCGACGGCTGCACGCTTCGACGACAGCAGCTTCGACGACAACCACCGCCTCGCGTCATTCATCGCGTCAATCGGGCTGCGACCATCCACTGTTTCTCGTCTAACGACAACCGC

Protein sequence

LGRPHAPTRRTSTAARFDDRSFDGCTLRRQQLRRQPPPRVIHRVNRAATIHCFSSNDNR

Homology

[Close]

BLAST of MELO3C027919 vs. NCBI nr
Match: KAA0052339.1 (hypothetical protein E6C27_scaffold207G001770 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 6.4e-13
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 7  PTRRTSTAARFDDRSFDGCTLRRQQLRRQPPPRVIHRVNRAATIHCFSSNDN 59
          P     TAA FDD SFDGCTL+R QLRRQPP RVIHRVNRAATIHCF S+DN
Sbjct: 21 PREEALTAAGFDDLSFDGCTLQRPQLRRQPPRRVIHRVNRAATIHCFLSDDN 72

[Close]

BLAST of MELO3C027919 vs. ExPASy TrEMBL
Match: A0A5A7UFT3 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001770 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-13
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 7  PTRRTSTAARFDDRSFDGCTLRRQQLRRQPPPRVIHRVNRAATIHCFSSNDN 59
          P     TAA FDD SFDGCTL+R QLRRQPP RVIHRVNRAATIHCF S+DN
Sbjct: 21 PREEALTAAGFDDLSFDGCTLQRPQLRRQPPRRVIHRVNRAATIHCFLSDDN 72

The following BLAST results are available for this feature:

BLAST of MELO3C027919 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052339.1	6.4e-13	76.92	hypothetical protein E6C27_scaffold207G001770 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C027919 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C027919 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFT3	3.1e-13	76.92	DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of MELO3C027919 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027919.1	MELO3C027919.1	mRNA