MELO3C027915 (gene) Melon (DHL92) v4

Overview
NameMELO3C027915
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr02: 4985794 .. 4985922 (+)
RNA-Seq ExpressionMELO3C027915
SyntenyMELO3C027915
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAACGATCGATCGGGTGGTGGAGGGAGAAAACGGCGACGATGGTGGAAGGCTTATACGGCTGAGGTCGATCGGTTTGTGAAGGGAGAAAACGGCAACGATGGTGGATGGGAGGGAGAGAACGGCTGAG

mRNA sequence

GCAACGATCGATCGGGTGGTGGAGGGAGAAAACGGCGACGATGGTGGAAGGCTTATACGGCTGAGGTCGATCGGTTTGTGAAGGGAGAAAACGGCAACGATGGTGGATGGGAGGGAGAGAACGGCTGAG

Coding sequence (CDS)

AACGATCGATCGGGTGGTGGAGGGAGAAAACGGCGACGATGGTGGAAGGCTTATACGGCTGAGGTCGATCGGTTTGTGAAGGGAGAAAACGGCAACGATGGTGGATGGGAGGGAGAGAACGGCTGA

Protein sequence

NDRSGGGGRKRRRWWKAYTAEVDRFVKGENGNDGGWEGENG
Homology
[Close]
BLAST of MELO3C027915 vs. NCBI nr
Match: KAA0058105.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-08
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1  NDRSGGGGRKRRRWWKAYTAEVDRFVKGENGNDG 35
          NDRSGGGGR RRRWWKAYTAE+DR V+GEN NDG
Sbjct: 8  NDRSGGGGRNRRRWWKAYTAELDRLVEGENSNDG 41

[Close]
BLAST of MELO3C027915 vs. ExPASy TrEMBL
Match: A0A5A7UWW1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004130 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-08
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1  NDRSGGGGRKRRRWWKAYTAEVDRFVKGENGNDG 35
          NDRSGGGGR RRRWWKAYTAE+DR V+GEN NDG
Sbjct: 8  NDRSGGGGRNRRRWWKAYTAELDRLVEGENSNDG 41

The following BLAST results are available for this feature:
BLAST of MELO3C027915 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0058105.14.3e-0885.29LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C027915 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C027915 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UWW12.1e-0885.29LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C027915 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027915.1MELO3C027915.1mRNA