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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. CTGCAAAATAACCCTCGGAGCCGGCCGTAGTAGAGCCGAACCACCATCCCAGCCGCGCCGCATCTGCAAGCCGAATCCGGAGCCGCTCCTCATCCGCGCAGCCGAGCGCCGTATCTGCAGCCAGCCACGCCGCGCCGCGTAGATCCGACGCAGCGCAGCCGGAACTCGTCGAGACAGCCGAAGCCAACCAGCCGCGCCGCTCCGATCGAGCCGAAGGGAGCCGCTTCGATCCGCGCACAGCCGTCTCCCGCAGCCGCCACTCGAAGCCGATCCGCCGCGCGCGCCTCCAGCCGTCGAAGCCGAACCCACGTTTCGGCCG mRNA sequence CTGCAAAATAACCCTCGGAGCCGGCCGTAGTAGAGCCGAACCACCATCCCAGCCGCGCCGCATCTGCAAGCCGCAGCCGGAACTCGTCGAGACAGCCGAAGCCAACCAGCCGCGCCGCTCCGATCGAGCCGAAGGGAGCCGCTTCGATCCGCGCACAGCCGTCTCCCGCAGCCGCCACTCGAAGCCGATCCGCCGCGCGCGCCTCCAGCCGTCGAAGCCGAACCCACGTTTCGGCCG Coding sequence (CDS) TGCAAAATAACCCTCGGAGCCGGCCGTAGTAGAGCCGAACCACCATCCCAGCCGCGCCGCATCTGCAAGCCGCAGCCGGAACTCGTCGAGACAGCCGAAGCCAACCAGCCGCGCCGCTCCGATCGAGCCGAAGGGAGCCGCTTCGATCCGCGCACAGCCGTCTCCCGCAGCCGCCACTCGAAGCCGATCCGCCGCGCGCGCCTCCAGCCGTCGAAGCCGAACCCACGTTTCGGC Protein sequence CKITLGAGRSRAEPPSQPRRICKPQPELVETAEANQPRRSDRAEGSRFDPRTAVSRSRHSKPIRRARLQPSKPNPRFG
Homology
BLAST of MELO3C027910 vs. NCBI nr
Match: KAA0051879.1 (protein NUCLEAR FUSION DEFECTIVE 4-like [Cucumis melo var. makuwa]) HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06 Identity = 38/61 (62.30%), Postives = 42/61 (68.85%), Query Frame = 0
Query: 11 RAEPPSQPRRICKPQPELVETAEANQPRRSDRAEGSRFDPRTAVSRSRHSKPIRRARLQP 70
R+E QPRR + + QPRRSDRAEGS FDPR AVSRSRHSKPIRRA LQP
Sbjct: 582 RSEKLRQPRR----------SEKLRQPRRSDRAEGSHFDPRPAVSRSRHSKPIRRACLQP 632
Query: 71 S 72
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Sbjct: 642 T 632
BLAST of MELO3C027910 vs. ExPASy TrEMBL
Match: A0A5A7UEF4 (Protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003240 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 9.7e-07 Identity = 38/61 (62.30%), Postives = 42/61 (68.85%), Query Frame = 0
Query: 11 RAEPPSQPRRICKPQPELVETAEANQPRRSDRAEGSRFDPRTAVSRSRHSKPIRRARLQP 70
R+E QPRR + + QPRRSDRAEGS FDPR AVSRSRHSKPIRRA LQP
Sbjct: 582 RSEKLRQPRR----------SEKLRQPRRSDRAEGSHFDPRPAVSRSRHSKPIRRACLQP 632
Query: 71 S 72
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Sbjct: 642 T 632
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0051879.1 | 2.0e-06 | 62.30 | protein NUCLEAR FUSION DEFECTIVE 4-like [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UEF4 | 9.7e-07 | 62.30 | Protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 34..56 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..78 |
Relationships
The following mRNA feature(s) are a part of this gene:
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