MELO3C027909 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027909
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Polyadenylate-binding protein 2-like
Location	chr08: 5052610 .. 5053951 (+)
RNA-Seq Expression	MELO3C027909
Synteny	MELO3C027909

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTCTCTGTGCTTCAAATGAGTAGCCTATCTATGCGCAGAAGAGATATTGAGTATTCATTTATGGCACTTAGCAGCAGTCCTTCATGTGGTTTAGGACGTATGGCAGTTACCAATGAGTGATTTCCTCGACTTTAGTGTCAATTAAATCACAACTTGAGGTGGTGGAGAGTTTTCAGTAGTAGTTAGGATATTTTTATGATATATGGAAATGGGAGATGAGAATTGCTCATAAAGTTTATCATATCCGAAAGAGATATGCTTGGTGCAAATGAACTATGTATTTCTAGAAGTGGACACTGGACAGTGCTTGAGGGGAAGTGCTAATTACTAGACATACACTAAAATTAACTTTCATAAATCATAATAGCACTACACATTTATGGATGACAGACAAGTCACAGGCAGATGTTAAAATGTTGATTGCTTAAGTTTTTGTCTTAGTTGCCTTCTTTTCAAGTGGCCAAATAATAGAGTTGGGATTGGCATGAGGCATGATGCATACGGAAATATATTTTTTTAAAAAAATGTTTGACATGACCATCGATTACTGATGTTGGAGTAAATATCCTACACCGATTCCGTAACTTTTCTGTTGCTCTAGGAGCAGTTCACAAAGATTGGTTCATCTTCTTTTCTAGTTTTTAACTTTTAAGATAAAGGATCACATAGTCCATCAGGTTAAAGGAGAATCAATCAACGTGTTTGAGCTGTTTATTAGTTTTGAGTGCAATAAAATATTCATACTTTTTAAGTTGGTCCTCTTTGGTATTATACTGCTATCGTTTCCATGCTTTGCTTATGATTTAGTTTGTGTTTGATTAAATAACATTTAAGATGGAATTGGACTTGCAGGTTGATTATGCGTGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTAGCTCCTTGGGGAAAGATGATTTACGTTTCTATTCTATCAAGTATTGGACATTGGCATACTAATTCTACATTTTATTATTGGCGCCGTTATCTGTGCATGTTGTTTGAGTTCTTATAACTAATGTTAAATGGTTTTAATATCATTCTGTTCATCTCAGGTTCAACAAAAGCGAACAAATGTTCCCGGTATGAAGCAGTATTTTCCCCAGCGTTACAATCCTTACATGGGCTATCGATCCAGGAGGCCTTACGTGCCCCCTTATTTTTACTCACCATATGGAGGATATGGGTAA

mRNA sequence

CTTCTCTCTGTGCTTCAAATGAGTAGCCTATCTATGCGCAGAAGAGATATTGAGTATTCATTTATGGCACTTAGCAGCAGTCCTTCATGTGGTTTAGGACGTATGGCAGTTACCAATGAGTGATTTCCTCGACTTTAGTGTCAATTAAATCACAACTTGAGGTGGTGGAGAGTTTTCAGTAGTAGTTAGGATATTTTTATGATATATGGAAATGGGAGATGAGAATTGCTCATAAAGTTTATCATATCCGAAAGAGATATGCTTGGTGCAAATGAACTATGTATTTCTAGAAGTGGACACTGGACAGTGCTTGAGGGGAAGTGCTAATTACTAGACATACACTAAAATTAACTTTCATAAATCATAATAGCACTACACATTTATGGATGACAGACAAGTCACAGGCAGATGTTAAAATGTTGATTGCTTAAGTTTTTGTCTTAGTTGCCTTCTTTTCAAGTGGCCAAATAATAGAGTTGGGATTGGCATGAGGCATGATGCATACGGAAATATATTTTTTTAAAAAAATGTTTGACATGACCATCGATTACTGATGTTGGAGTAAATATCCTACACCGATTCCGTAACTTTTCTGTTGCTCTAGGAGCAGTTCACAAAGATTGGTTCATCTTCTTTTCTAGTTTTTAACTTTTAAGATAAAGGATCACATAGTCCATCAGGTTAAAGGAGAATCAATCAACGTGTTTGAGCTGTTTATTAGTTTTGAGTGCAATAAAATATTCATACTTTTTAAGTTGGTCCTCTTTGGTATTATACTGCTATCGTTTCCATGCTTTGCTTATGATTTAGTTTGTGTTTGATTAAATAACATTTAAGATGGAATTGGACTTGCAGGTTGATTATGCGTGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGCGAACAAATGTTCCCGGTATGAAGCAGTATTTTCCCCAGCGTTACAATCCTTACATGGGCTATCGATCCAGGAGGCCTTACGTGCCCCCTTATTTTTACTCACCATATGGAGGATATGGGTAA

Coding sequence (CDS)

ATGGAATTGGACTTGCAGGTTGATTATGCGTGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGCGAACAAATGTTCCCGGTATGAAGCAGTATTTTCCCCAGCGTTACAATCCTTACATGGGCTATCGATCCAGGAGGCCTTACGTGCCCCCTTATTTTTACTCACCATATGGAGGATATGGGTAA

Protein sequence

MELDLQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG

Homology

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BLAST of MELO3C027909 vs. NCBI nr
Match: XP_011657966.1 (polyadenylate-binding protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 3.1e-56
Identity = 107/110 (97.27%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 5   LQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETEL 64
           + VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA+QEALLLNETEL
Sbjct: 1   MMVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETEL 60

Query: 65  HGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           HGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG
Sbjct: 61  HGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 110

[Close]

BLAST of MELO3C027909 vs. NCBI nr
Match: KAA0036316.1 (polyadenylate-binding protein 2-like [Cucumis melo var. makuwa] >TYK12710.1 polyadenylate-binding protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 4.0e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG
Sbjct: 90  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 149

Query: 67  RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG
Sbjct: 150 RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 197

[Close]

BLAST of MELO3C027909 vs. NCBI nr
Match: XP_004143458.1 (polyadenylate-binding protein 3 isoform X1 [Cucumis sativus] >KGN48735.1 hypothetical protein Csa_003260 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 5.3e-56
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA+QEALLLNETELHG
Sbjct: 90  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHG 149

Query: 67  RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG
Sbjct: 150 RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 197

[Close]

BLAST of MELO3C027909 vs. NCBI nr
Match: XP_038882560.1 (polyadenylate-binding protein 3-like isoform X3 [Benincasa hispida])

HSP 1 Score: 225.3 bits (573), Expect = 2.6e-55
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 5   LQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETEL 64
           + VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNE+EL
Sbjct: 1   MMVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESEL 60

Query: 65  HGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           HGRQLKVQQKRTNVPGMKQYFPQRY+PYMGYRSRRPYVPPYFYSPYGGYG
Sbjct: 61  HGRQLKVQQKRTNVPGMKQYFPQRYSPYMGYRSRRPYVPPYFYSPYGGYG 110

[Close]

BLAST of MELO3C027909 vs. NCBI nr
Match: XP_038882558.1 (polyadenylate-binding protein 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 224.6 bits (571), Expect = 4.5e-55
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNE+ELHG
Sbjct: 124 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHG 183

Query: 67  RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           RQLKVQQKRTNVPGMKQYFPQRY+PYMGYRSRRPYVPPYFYSPYGGYG
Sbjct: 184 RQLKVQQKRTNVPGMKQYFPQRYSPYMGYRSRRPYVPPYFYSPYGGYG 231

[Close]

BLAST of MELO3C027909 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.7e-47
Identity = 92/108 (85.19%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNE+ELHG
Sbjct: 96  VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 155

Query: 67  RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           RQLKV  KRTNVPGMKQY P R+NP MGYR RRP+VPPYFYSPY GYG
Sbjct: 156 RQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPY-GYG 202

[Close]

BLAST of MELO3C027909 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.8e-46
Identity = 89/108 (82.41%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQQHFQ+CGTV+RVTILTDKFG PKGFAYVEFVE EAVQEAL LNE+ELHG
Sbjct: 99  VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 158

Query: 67  RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           RQLKV QKRTNVPG+KQ+  +R+NPYMGYR RRP++ PY YSPY GYG
Sbjct: 159 RQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPY-GYG 205

[Close]

BLAST of MELO3C027909 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.8e-36
Identity = 74/103 (71.84%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHG
Sbjct: 110 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHG 169

Query: 67  RQLKVQQKRTNVPGMKQY--FPQRYNPYMGYRSRRPYVPPYFY 108
           RQ+KV  KRTNVPGM+Q+    + + P  G+    P+ PPY Y
Sbjct: 170 RQIKVSAKRTNVPGMRQFRGRGRPFRPMRGFMPGVPFYPPYAY 212

[Close]

BLAST of MELO3C027909 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.0e-22
Identity = 61/105 (58.10%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELH 66
           VDY+ TPEE+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   V  ALLLN + LH
Sbjct: 62  VDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLH 121

Query: 67  GRQLKVQQKRTNVPGMKQYFPQ-----RYNPYMGYRSRRPYVPPY 106
            R LKV  KRTNVPGM +   +     R     GYR R     PY
Sbjct: 122 ERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166

[Close]

BLAST of MELO3C027909 vs. ExPASy Swiss-Prot
Match: Q28165 (Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-19
Identity = 51/93 (54.84%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELH 66
           VDY  T EE++ HF  CG+VNRVTIL DKF GHPKGFAY+EF + E+V+ +L L+E+   
Sbjct: 179 VDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFR 238

Query: 67  GRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSR 99
           GRQ+KV  KRTN PG+      R  P   YR+R
Sbjct: 239 GRQIKVIPKRTNRPGIST--TDRGFPRARYRAR 269

[Close]

BLAST of MELO3C027909 vs. ExPASy TrEMBL
Match: A0A5A7T2C2 (Polyadenylate-binding protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002980 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.0e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG
Sbjct: 90  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 149

Query: 67  RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG
Sbjct: 150 RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 197

[Close]

BLAST of MELO3C027909 vs. ExPASy TrEMBL
Match: A0A0A0KG83 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499790 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.6e-56
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA+QEALLLNETELHG
Sbjct: 90  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHG 149

Query: 67  RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG
Sbjct: 150 RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 197

[Close]

BLAST of MELO3C027909 vs. ExPASy TrEMBL
Match: A0A6J1BTA9 (polyadenylate-binding protein 3-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005528 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.3e-54
Identity = 105/110 (95.45%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 5   LQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETEL 64
           ++VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEF+EAEAVQEALLLNE+EL
Sbjct: 1   MRVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFLEAEAVQEALLLNESEL 60

Query: 65  HGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           HGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY GYG
Sbjct: 61  HGRQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY-GYG 109

[Close]

BLAST of MELO3C027909 vs. ExPASy TrEMBL
Match: A0A6J1BTY4 (polyadenylate-binding protein 3-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005528 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEF+EAEAVQEALLLNE+ELHG
Sbjct: 90  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFLEAEAVQEALLLNESELHG 149

Query: 67  RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY GYG
Sbjct: 150 RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY-GYG 196

[Close]

BLAST of MELO3C027909 vs. ExPASy TrEMBL
Match: A0A6J1KVH8 (polyadenylate-binding protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111496810 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.3e-52
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEF+EAEAVQEALLLNE+ELHG
Sbjct: 90  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHG 149

Query: 67  RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           RQLKVQQKRTN+PGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY GYG
Sbjct: 150 RQLKVQQKRTNIPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPY-GYG 196

[Close]

BLAST of MELO3C027909 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 188.3 bits (477), Expect = 3.3e-48
Identity = 92/108 (85.19%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNE+ELHG
Sbjct: 96  VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 155

Query: 67  RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           RQLKV  KRTNVPGMKQY P R+NP MGYR RRP+VPPYFYSPY GYG
Sbjct: 156 RQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPY-GYG 202

[Close]

BLAST of MELO3C027909 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 188.3 bits (477), Expect = 3.3e-48
Identity = 92/108 (85.19%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNE+ELHG
Sbjct: 96  VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 155

Query: 67  RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           RQLKV  KRTNVPGMKQY P R+NP MGYR RRP+VPPYFYSPY GYG
Sbjct: 156 RQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPY-GYG 202

[Close]

BLAST of MELO3C027909 vs. TAIR 10
Match: AT5G10350.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 188.3 bits (477), Expect = 3.3e-48
Identity = 92/108 (85.19%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNE+ELHG
Sbjct: 7   VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 66

Query: 67  RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           RQLKV  KRTNVPGMKQY P R+NP MGYR RRP+VPPYFYSPY GYG
Sbjct: 67  RQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPY-GYG 113

[Close]

BLAST of MELO3C027909 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 184.1 bits (466), Expect = 6.2e-47
Identity = 89/108 (82.41%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQQHFQ+CGTV+RVTILTDKFG PKGFAYVEFVE EAVQEAL LNE+ELHG
Sbjct: 99  VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 158

Query: 67  RQLKVQQKRTNVPGMKQYFPQRYNPYMGYRSRRPYVPPYFYSPYGGYG 115
           RQLKV QKRTNVPG+KQ+  +R+NPYMGYR RRP++ PY YSPY GYG
Sbjct: 159 RQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPY-GYG 205

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BLAST of MELO3C027909 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 151.8 bits (382), Expect = 3.4e-37
Identity = 74/103 (71.84%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 7   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHG
Sbjct: 110 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHG 169

Query: 67  RQLKVQQKRTNVPGMKQY--FPQRYNPYMGYRSRRPYVPPYFY 108
           RQ+KV  KRTNVPGM+Q+    + + P  G+    P+ PPY Y
Sbjct: 170 RQIKVSAKRTNVPGMRQFRGRGRPFRPMRGFMPGVPFYPPYAY 212

The following BLAST results are available for this feature:

BLAST of MELO3C027909 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657966.1	3.1e-56	97.27	polyadenylate-binding protein 3 isoform X2 [Cucumis sativus]	[more]
KAA0036316.1	4.0e-56	100.00	polyadenylate-binding protein 2-like [Cucumis melo var. makuwa] >TYK12710.1 poly...	[more]
XP_004143458.1	5.3e-56	99.07	polyadenylate-binding protein 3 isoform X1 [Cucumis sativus] >KGN48735.1 hypothe...	[more]
XP_038882560.1	2.6e-55	96.36	polyadenylate-binding protein 3-like isoform X3 [Benincasa hispida]	[more]
XP_038882558.1	4.5e-55	98.15	polyadenylate-binding protein 3-like isoform X1 [Benincasa hispida]	[more]

BLAST of MELO3C027909 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX90	4.7e-47	85.19	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
Q9FJN9	8.8e-46	82.41	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q93VI4	4.8e-36	71.84	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
O14327	3.0e-22	58.10	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q28165	1.8e-19	54.84	Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3	[more]

BLAST of MELO3C027909 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T2C2	2.0e-56	100.00	Polyadenylate-binding protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KG83	2.6e-56	99.07	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499790 PE=4 SV...	[more]
A0A6J1BTA9	5.3e-54	95.45	polyadenylate-binding protein 3-like isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1BTY4	1.2e-53	97.22	polyadenylate-binding protein 3-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1KVH8	1.3e-52	95.37	polyadenylate-binding protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111496810...	[more]

BLAST of MELO3C027909 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10350.2	3.3e-48	85.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	3.3e-48	85.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.3	3.3e-48	85.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G65260.1	6.2e-47	82.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.1	3.4e-37	71.84	polyadenylate-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 6..72 e-value: 3.5E-13 score: 59.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 8..70 e-value: 9.7E-14 score: 51.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..76 score: 13.890656
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 6..80 e-value: 5.8E-23 score: 82.9
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 6..113
None	No IPR available	PANTHER	PTHR23236:SF79	SUBFAMILY NOT NAMED	coord: 6..113
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 6..71 e-value: 5.65234E-44 score: 135.882
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 7..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027909.1	MELO3C027909.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding