MELO3C027780 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027780
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Amino acid permease 6
Location	chr12: 13805154 .. 13805304 (+)
RNA-Seq Expression	MELO3C027780
Synteny	MELO3C027780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCCCAATGTGCAATCTAGATCACAAAAGGAAGGCTCAGAATCTGAACAATTTTGGAATTTGCTGGGAGGCAAATCTGAATATCCTAGCCAAAAAATCAGTCGAGATGCTGAGAGTGATCCTCACCTATTTTCTTGTACTTTCTCAAGAG

mRNA sequence

CAGCCCAATGTGCAATCTAGATCACAAAAGGAAGGCTCAGAATCTGAACAATTTTGGAATTTGCTGGGAGGCAAATCTGAATATCCTAGCCAAAAAATCAGTCGAGATGCTGAGAGTGATCCTCACCTATTTTCTTGTACTTTCTCAAGAG

Coding sequence (CDS)

ATGTGCAATCTAGATCACAAAAGGAAGGCTCAGAATCTGAACAATTTTGGAATTTGCTGGGAGGCAAATCTGAATATCCTAGCCAAAAAATCAGTCGAGATGCTGAGAGTGATCCTCACCTATTTTCTTGTACTTTCTCAAGAG

Protein sequence

MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE

Homology

[Close]

BLAST of MELO3C027780 vs. NCBI nr
Match: KAA0051345.1 (RHOMBOID-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 7.0e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE 49
           MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE
Sbjct: 172 MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE 219

[Close]

BLAST of MELO3C027780 vs. NCBI nr
Match: KAA0059909.1 (uncharacterized protein E6C27_scaffold108G002120 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 7.0e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE 49
           MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE
Sbjct: 404 MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE 451

[Close]

BLAST of MELO3C027780 vs. NCBI nr
Match: KAA0050422.1 (amino acid permease 6 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE 49
           MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEM+RVILTYFLVLSQE
Sbjct: 244 MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMMRVILTYFLVLSQE 291

[Close]

BLAST of MELO3C027780 vs. NCBI nr
Match: TYK01158.1 (amino acid permease 6 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE 49
           MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEM+RVILTYFLVLSQE
Sbjct: 646 MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMMRVILTYFLVLSQE 693

[Close]

BLAST of MELO3C027780 vs. ExPASy TrEMBL
Match: A0A5A7UCH8 (RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00670 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.4e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE 49
           MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE
Sbjct: 172 MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE 219

[Close]

BLAST of MELO3C027780 vs. ExPASy TrEMBL
Match: A0A5A7V263 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G002120 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.4e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE 49
           MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE
Sbjct: 404 MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE 451

[Close]

BLAST of MELO3C027780 vs. ExPASy TrEMBL
Match: A0A5D3BQ26 (Amino acid permease 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00380 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.8e-18
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE 49
           MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEM+RVILTYFLVLSQE
Sbjct: 646 MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMMRVILTYFLVLSQE 693

[Close]

BLAST of MELO3C027780 vs. ExPASy TrEMBL
Match: A0A5A7U3K4 (Amino acid permease 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00100 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.8e-18
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMLRVILTYFLVLSQE 49
           MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEM+RVILTYFLVLSQE
Sbjct: 244 MCNLDHKRKAQNLNNFGICWEANLNILAKKSVEMMRVILTYFLVLSQE 291

The following BLAST results are available for this feature:

BLAST of MELO3C027780 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C027780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051345.1	7.0e-18	100.00	RHOMBOID-like protein 12 [Cucumis melo var. makuwa]	[more]
KAA0059909.1	7.0e-18	100.00	uncharacterized protein E6C27_scaffold108G002120 [Cucumis melo var. makuwa]	[more]
KAA0050422.1	1.2e-17	97.92	amino acid permease 6 [Cucumis melo var. makuwa]	[more]
TYK01158.1	1.2e-17	97.92	amino acid permease 6 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C027780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UCH8	3.4e-18	100.00	RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7V263	3.4e-18	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BQ26	5.8e-18	97.92	Amino acid permease 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10...	[more]
A0A5A7U3K4	5.8e-18	97.92	Amino acid permease 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17...	[more]

BLAST of MELO3C027780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027780.1	MELO3C027780.1	mRNA